Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
CACNA1FO60840 AC091046.1-201ENST00000331871 207 ntBASIC17.86■□□□□ 0.45
CACNA1FO60840 IGHV1-3-201ENST00000390595 395 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
CACNA1FO60840 MPV17-204ENST00000399052 749 ntTSL 4 BASIC17.86■□□□□ 0.45
CACNA1FO60840 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC17.86■□□□□ 0.45
CACNA1FO60840 RNA5SP417-201ENST00000516459 108 ntBASIC17.86■□□□□ 0.45
CACNA1FO60840 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
CACNA1FO60840 TCL1A-205ENST00000555202 717 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CACNA1FO60840 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC17.86■□□□□ 0.45
CACNA1FO60840 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC17.86■□□□□ 0.45
CACNA1FO60840 HIST1H4I-201ENST00000615353 1294 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
CACNA1FO60840 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC17.86■□□□□ 0.45
CACNA1FO60840 DIS3L2-205ENST00000409401 2048 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CACNA1FO60840 SVIL-AS1-204ENST00000427063 2025 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CACNA1FO60840 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
CACNA1FO60840 ANKDD1A-202ENST00000395720 1518 ntTSL 5 BASIC17.85■□□□□ 0.45
CACNA1FO60840 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CACNA1FO60840 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
CACNA1FO60840 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CACNA1FO60840 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CACNA1FO60840 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CACNA1FO60840 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
CACNA1FO60840 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
CACNA1FO60840 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
CACNA1FO60840 CCDC51-206ENST00000447018 1461 ntTSL 2 BASIC17.85■□□□□ 0.45
CACNA1FO60840 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CACNA1FO60840 AL928654.5-201ENST00000624831 2501 ntBASIC17.85■□□□□ 0.45
CACNA1FO60840 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CACNA1FO60840 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC17.85■□□□□ 0.45
CACNA1FO60840 KRTAP2-2-201ENST00000398477 733 ntAPPRIS P2 BASIC17.85■□□□□ 0.45
CACNA1FO60840 GRPEL2P1-201ENST00000453145 339 ntBASIC17.85■□□□□ 0.45
CACNA1FO60840 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC17.85■□□□□ 0.45
CACNA1FO60840 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC17.85■□□□□ 0.45
CACNA1FO60840 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC17.85■□□□□ 0.45
CACNA1FO60840 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CACNA1FO60840 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CACNA1FO60840 GLB1L-202ENST00000392089 2574 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CACNA1FO60840 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC17.85■□□□□ 0.45
CACNA1FO60840 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC17.85■□□□□ 0.45
CACNA1FO60840 KIF6-201ENST00000229913 1330 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CACNA1FO60840 COQ3-201ENST00000254759 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CACNA1FO60840 RBM4B-201ENST00000310046 1840 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CACNA1FO60840 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC17.85■□□□□ 0.45
CACNA1FO60840 AC061965.1-201ENST00000560524 1465 ntBASIC17.85■□□□□ 0.45
CACNA1FO60840 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CACNA1FO60840 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC17.85■□□□□ 0.45
CACNA1FO60840 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CACNA1FO60840 LDB3-207ENST00000542786 1889 ntTSL 2 BASIC17.84■□□□□ 0.45
CACNA1FO60840 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CACNA1FO60840 MED11-201ENST00000293777 833 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CACNA1FO60840 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC17.84■□□□□ 0.45
CACNA1FO60840 RN7SL767P-201ENST00000493013 295 ntBASIC17.84■□□□□ 0.45
CACNA1FO60840 CD44-224ENST00000526669 870 ntTSL 5 BASIC17.84■□□□□ 0.45
CACNA1FO60840 AP003390.1-201ENST00000533253 523 ntTSL 5 BASIC17.84■□□□□ 0.45
CACNA1FO60840 DUSP22-213ENST00000605035 1231 ntTSL 2 BASIC17.84■□□□□ 0.45
CACNA1FO60840 ADAMTSL4-AS1-203ENST00000617352 1036 ntTSL 5 BASIC17.84■□□□□ 0.45
CACNA1FO60840 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CACNA1FO60840 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
CACNA1FO60840 ARMCX3-203ENST00000471229 2051 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CACNA1FO60840 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC17.84■□□□□ 0.45
CACNA1FO60840 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CACNA1FO60840 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC17.84■□□□□ 0.45
CACNA1FO60840 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CACNA1FO60840 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
CACNA1FO60840 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CACNA1FO60840 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC17.84■□□□□ 0.45
CACNA1FO60840 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CACNA1FO60840 AC023794.5-201ENST00000564380 2157 ntBASIC17.84■□□□□ 0.45
CACNA1FO60840 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
CACNA1FO60840 AC006372.4-201ENST00000624122 1543 ntBASIC17.84■□□□□ 0.45
CACNA1FO60840 FLAD1-206ENST00000368432 1839 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CACNA1FO60840 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CACNA1FO60840 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
CACNA1FO60840 TPM3-211ENST00000368531 1115 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CACNA1FO60840 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CACNA1FO60840 BUD31-205ENST00000456893 512 ntTSL 5 BASIC17.84■□□□□ 0.45
CACNA1FO60840 COQ10BP2-201ENST00000513804 724 ntBASIC17.84■□□□□ 0.45
CACNA1FO60840 RTN4RL2-203ENST00000533205 637 ntTSL 3 BASIC17.84■□□□□ 0.45
CACNA1FO60840 ANAPC15-204ENST00000535234 848 ntAPPRIS P3 TSL 2 BASIC17.84■□□□□ 0.45
CACNA1FO60840 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
CACNA1FO60840 AC132825.4-202ENST00000578792 434 ntBASIC17.84■□□□□ 0.45
CACNA1FO60840 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC17.84■□□□□ 0.45
CACNA1FO60840 AL049840.2-201ENST00000602722 535 ntBASIC17.84■□□□□ 0.45
CACNA1FO60840 AL356417.2-202ENST00000608986 532 ntTSL 3 BASIC17.84■□□□□ 0.45
CACNA1FO60840 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CACNA1FO60840 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CACNA1FO60840 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
CACNA1FO60840 GIT2-201ENST00000320063 2094 ntTSL 5 BASIC17.83■□□□□ 0.45
CACNA1FO60840 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CACNA1FO60840 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.45
CACNA1FO60840 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
CACNA1FO60840 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
CACNA1FO60840 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CACNA1FO60840 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CACNA1FO60840 PES1P2-201ENST00000449745 1735 ntBASIC17.83■□□□□ 0.45
CACNA1FO60840 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC17.83■□□□□ 0.45
CACNA1FO60840 GGCT-203ENST00000409144 836 ntTSL 2 BASIC17.83■□□□□ 0.44
CACNA1FO60840 TRPM2-AS-201ENST00000423310 586 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CACNA1FO60840 AL139241.1-201ENST00000433374 1168 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CACNA1FO60840 AC011995.2-201ENST00000452701 574 ntTSL 4 BASIC17.83■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 84 ms