Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
TRIM38O00635 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
TRIM38O00635 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC14.72□□□□□ -0.05
TRIM38O00635 MIR769-201ENST00000390225 118 ntBASIC14.72□□□□□ -0.05
TRIM38O00635 AL136309.1-201ENST00000403917 691 ntBASIC14.72□□□□□ -0.05
TRIM38O00635 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC14.72□□□□□ -0.05
TRIM38O00635 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
TRIM38O00635 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
TRIM38O00635 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
TRIM38O00635 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
TRIM38O00635 MESTP3-201ENST00000503460 968 ntBASIC14.72□□□□□ -0.05
TRIM38O00635 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC14.72□□□□□ -0.05
TRIM38O00635 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC14.72□□□□□ -0.05
TRIM38O00635 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC14.72□□□□□ -0.05
TRIM38O00635 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC14.72□□□□□ -0.05
TRIM38O00635 DUX4L47-201ENST00000566374 394 ntBASIC14.72□□□□□ -0.05
TRIM38O00635 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC14.72□□□□□ -0.05
TRIM38O00635 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC14.72□□□□□ -0.05
TRIM38O00635 HCG18-245ENST00000602550 559 ntTSL 4 BASIC14.72□□□□□ -0.05
TRIM38O00635 AP001505.2-201ENST00000616815 443 ntBASIC14.72□□□□□ -0.05
TRIM38O00635 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC14.72□□□□□ -0.05
TRIM38O00635 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC14.72□□□□□ -0.05
TRIM38O00635 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC14.72□□□□□ -0.05
TRIM38O00635 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC14.72□□□□□ -0.05
TRIM38O00635 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC14.72□□□□□ -0.05
TRIM38O00635 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
TRIM38O00635 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC14.72□□□□□ -0.05
TRIM38O00635 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
TRIM38O00635 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC14.72□□□□□ -0.05
TRIM38O00635 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC14.72□□□□□ -0.05
TRIM38O00635 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
TRIM38O00635 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
TRIM38O00635 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
TRIM38O00635 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
TRIM38O00635 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
TRIM38O00635 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC14.72□□□□□ -0.05
TRIM38O00635 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
TRIM38O00635 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
TRIM38O00635 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
TRIM38O00635 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
TRIM38O00635 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC14.72□□□□□ -0.05
TRIM38O00635 AC011474.4-201ENST00000623523 2076 ntBASIC14.72□□□□□ -0.05
TRIM38O00635 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
TRIM38O00635 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC14.72□□□□□ -0.05
TRIM38O00635 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
TRIM38O00635 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC14.71□□□□□ -0.05
TRIM38O00635 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC14.71□□□□□ -0.05
TRIM38O00635 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
TRIM38O00635 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
TRIM38O00635 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC14.71□□□□□ -0.05
TRIM38O00635 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
TRIM38O00635 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
TRIM38O00635 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
TRIM38O00635 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC14.71□□□□□ -0.05
TRIM38O00635 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
TRIM38O00635 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
TRIM38O00635 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
TRIM38O00635 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
TRIM38O00635 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
TRIM38O00635 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC14.71□□□□□ -0.05
TRIM38O00635 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
TRIM38O00635 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC14.71□□□□□ -0.05
TRIM38O00635 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
TRIM38O00635 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC14.71□□□□□ -0.05
TRIM38O00635 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC14.71□□□□□ -0.05
TRIM38O00635 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC14.71□□□□□ -0.05
TRIM38O00635 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC14.71□□□□□ -0.05
TRIM38O00635 AC021723.1-201ENST00000486306 515 ntBASIC14.71□□□□□ -0.05
TRIM38O00635 AC026434.2-201ENST00000506094 1078 ntBASIC14.71□□□□□ -0.05
TRIM38O00635 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC14.71□□□□□ -0.05
TRIM38O00635 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC14.71□□□□□ -0.05
TRIM38O00635 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC14.71□□□□□ -0.05
TRIM38O00635 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC14.71□□□□□ -0.05
TRIM38O00635 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC14.71□□□□□ -0.05
TRIM38O00635 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC14.71□□□□□ -0.05
TRIM38O00635 AC091812.3-201ENST00000621362 345 ntBASIC14.71□□□□□ -0.05
TRIM38O00635 AC022748.3-201ENST00000621828 275 ntBASIC14.71□□□□□ -0.05
TRIM38O00635 CU633904.3-201ENST00000624042 1029 ntBASIC14.71□□□□□ -0.05
TRIM38O00635 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
TRIM38O00635 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
TRIM38O00635 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
TRIM38O00635 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC14.71□□□□□ -0.05
TRIM38O00635 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
TRIM38O00635 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
TRIM38O00635 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
TRIM38O00635 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
TRIM38O00635 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.06
TRIM38O00635 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
TRIM38O00635 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.06
TRIM38O00635 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
TRIM38O00635 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.06
TRIM38O00635 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC14.71□□□□□ -0.06
TRIM38O00635 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC14.71□□□□□ -0.06
TRIM38O00635 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC14.71□□□□□ -0.06
TRIM38O00635 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.06
TRIM38O00635 SRC-202ENST00000373558 4304 ntTSL 5 BASIC14.7□□□□□ -0.06
TRIM38O00635 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
TRIM38O00635 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC14.7□□□□□ -0.06
TRIM38O00635 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC14.7□□□□□ -0.06
TRIM38O00635 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 66.2 ms