Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC15.13■□□□□ 0.01
AP4E1Q9UPM8 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC15.13■□□□□ 0.01
AP4E1Q9UPM8 AL162426.1-201ENST00000624141 743 ntBASIC15.13■□□□□ 0.01
AP4E1Q9UPM8 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
AP4E1Q9UPM8 AMT-239ENST00000636865 1914 ntTSL 5 BASIC15.13■□□□□ 0.01
AP4E1Q9UPM8 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC15.13■□□□□ 0.01
AP4E1Q9UPM8 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
AP4E1Q9UPM8 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC15.13■□□□□ 0.01
AP4E1Q9UPM8 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
AP4E1Q9UPM8 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC15.13■□□□□ 0.01
AP4E1Q9UPM8 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
AP4E1Q9UPM8 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
AP4E1Q9UPM8 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
AP4E1Q9UPM8 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
AP4E1Q9UPM8 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
AP4E1Q9UPM8 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
AP4E1Q9UPM8 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
AP4E1Q9UPM8 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
AP4E1Q9UPM8 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
AP4E1Q9UPM8 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC15.12■□□□□ 0.01
AP4E1Q9UPM8 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
AP4E1Q9UPM8 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC15.12■□□□□ 0.01
AP4E1Q9UPM8 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
AP4E1Q9UPM8 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC15.12■□□□□ 0.01
AP4E1Q9UPM8 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
AP4E1Q9UPM8 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
AP4E1Q9UPM8 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
AP4E1Q9UPM8 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
AP4E1Q9UPM8 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
AP4E1Q9UPM8 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
AP4E1Q9UPM8 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
AP4E1Q9UPM8 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC15.12■□□□□ 0.01
AP4E1Q9UPM8 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC15.12■□□□□ 0.01
AP4E1Q9UPM8 KLF2P1-201ENST00000447438 1042 ntBASIC15.12■□□□□ 0.01
AP4E1Q9UPM8 HSPB1P2-201ENST00000448722 546 ntBASIC15.12■□□□□ 0.01
AP4E1Q9UPM8 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC15.12■□□□□ 0.01
AP4E1Q9UPM8 HNRNPA1P36-201ENST00000521313 955 ntBASIC15.12■□□□□ 0.01
AP4E1Q9UPM8 RBM8B-201ENST00000555532 525 ntBASIC15.12■□□□□ 0.01
AP4E1Q9UPM8 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
AP4E1Q9UPM8 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC15.12■□□□□ 0.01
AP4E1Q9UPM8 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC15.12■□□□□ 0.01
AP4E1Q9UPM8 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC15.12■□□□□ 0.01
AP4E1Q9UPM8 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
AP4E1Q9UPM8 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC15.12■□□□□ 0.01
AP4E1Q9UPM8 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
AP4E1Q9UPM8 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
AP4E1Q9UPM8 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
AP4E1Q9UPM8 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
AP4E1Q9UPM8 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
AP4E1Q9UPM8 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC15.12■□□□□ 0.01
AP4E1Q9UPM8 TCAM1P-207ENST00000485295 1537 ntBASIC15.12■□□□□ 0.01
AP4E1Q9UPM8 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC15.12■□□□□ 0.01
AP4E1Q9UPM8 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC15.12■□□□□ 0.01
AP4E1Q9UPM8 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
AP4E1Q9UPM8 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
AP4E1Q9UPM8 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
AP4E1Q9UPM8 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
AP4E1Q9UPM8 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
AP4E1Q9UPM8 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
AP4E1Q9UPM8 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
AP4E1Q9UPM8 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC15.11■□□□□ 0.01
AP4E1Q9UPM8 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC15.11■□□□□ 0.01
AP4E1Q9UPM8 ST20-AS1-201ENST00000560255 4223 ntBASIC15.11■□□□□ 0.01
AP4E1Q9UPM8 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
AP4E1Q9UPM8 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
AP4E1Q9UPM8 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
AP4E1Q9UPM8 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC15.11■□□□□ 0.01
AP4E1Q9UPM8 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
AP4E1Q9UPM8 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
AP4E1Q9UPM8 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC15.11■□□□□ 0.01
AP4E1Q9UPM8 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
AP4E1Q9UPM8 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
AP4E1Q9UPM8 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
AP4E1Q9UPM8 GK-202ENST00000378941 458 ntTSL 3 BASIC15.11■□□□□ 0.01
AP4E1Q9UPM8 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC15.11■□□□□ 0.01
AP4E1Q9UPM8 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
AP4E1Q9UPM8 RPSAP36-202ENST00000494591 1261 ntBASIC15.11■□□□□ 0.01
AP4E1Q9UPM8 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC15.11■□□□□ 0.01
AP4E1Q9UPM8 RN7SL560P-201ENST00000577943 264 ntBASIC15.11■□□□□ 0.01
AP4E1Q9UPM8 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
AP4E1Q9UPM8 AC104506.1-201ENST00000609247 429 ntBASIC15.11■□□□□ 0.01
AP4E1Q9UPM8 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC15.11■□□□□ 0.01
AP4E1Q9UPM8 Z98259.2-201ENST00000641583 609 ntBASIC15.11■□□□□ 0.01
AP4E1Q9UPM8 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
AP4E1Q9UPM8 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
AP4E1Q9UPM8 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
AP4E1Q9UPM8 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
AP4E1Q9UPM8 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC15.11■□□□□ 0.01
AP4E1Q9UPM8 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
AP4E1Q9UPM8 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
AP4E1Q9UPM8 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
AP4E1Q9UPM8 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
AP4E1Q9UPM8 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
AP4E1Q9UPM8 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
AP4E1Q9UPM8 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC15.11■□□□□ 0.01
AP4E1Q9UPM8 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
AP4E1Q9UPM8 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
AP4E1Q9UPM8 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
AP4E1Q9UPM8 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
AP4E1Q9UPM8 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC15.11■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms