Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 BHLHE40-AS1-204ENST00000620618 2355 ntTSL 2 BASIC14.37□□□□□ -0.11
MKS1Q9NXB0 AC015712.2-202ENST00000560068 3213 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
MKS1Q9NXB0 CALB1-201ENST00000265431 2533 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
MKS1Q9NXB0 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
MKS1Q9NXB0 ST20-AS1-201ENST00000560255 4223 ntBASIC14.37□□□□□ -0.11
MKS1Q9NXB0 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
MKS1Q9NXB0 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
MKS1Q9NXB0 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
MKS1Q9NXB0 VASH2-202ENST00000366964 2960 ntTSL 5 BASIC14.37□□□□□ -0.11
MKS1Q9NXB0 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
MKS1Q9NXB0 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
MKS1Q9NXB0 MIR1233-2-201ENST00000408138 82 ntBASIC14.37□□□□□ -0.11
MKS1Q9NXB0 MIR1233-1-201ENST00000408722 82 ntBASIC14.37□□□□□ -0.11
MKS1Q9NXB0 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC14.37□□□□□ -0.11
MKS1Q9NXB0 BASP1P1-201ENST00000430708 665 ntBASIC14.37□□□□□ -0.11
MKS1Q9NXB0 URGCP-206ENST00000446958 365 ntTSL 2 BASIC14.37□□□□□ -0.11
MKS1Q9NXB0 SPTLC1P1-201ENST00000447199 261 ntBASIC14.37□□□□□ -0.11
MKS1Q9NXB0 AL035414.1-201ENST00000451327 857 ntBASIC14.37□□□□□ -0.11
MKS1Q9NXB0 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
MKS1Q9NXB0 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC14.37□□□□□ -0.11
MKS1Q9NXB0 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC14.37□□□□□ -0.11
MKS1Q9NXB0 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC14.37□□□□□ -0.11
MKS1Q9NXB0 AC145423.3-201ENST00000615987 467 ntBASIC14.37□□□□□ -0.11
MKS1Q9NXB0 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC14.37□□□□□ -0.11
MKS1Q9NXB0 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
MKS1Q9NXB0 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
MKS1Q9NXB0 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
MKS1Q9NXB0 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
MKS1Q9NXB0 PGBD2-202ENST00000355360 2879 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
MKS1Q9NXB0 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC14.37□□□□□ -0.11
MKS1Q9NXB0 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC14.37□□□□□ -0.11
MKS1Q9NXB0 FAM156A-221ENST00000622447 3757 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
MKS1Q9NXB0 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC14.37□□□□□ -0.11
MKS1Q9NXB0 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC14.37□□□□□ -0.11
MKS1Q9NXB0 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
MKS1Q9NXB0 TUBB4AP1-201ENST00000450755 1325 ntBASIC14.37□□□□□ -0.11
MKS1Q9NXB0 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
MKS1Q9NXB0 PATL2-207ENST00000560775 1913 ntAPPRIS P3 TSL 5 BASIC14.37□□□□□ -0.11
MKS1Q9NXB0 USP39-207ENST00000450066 2086 ntTSL 2 BASIC14.37□□□□□ -0.11
MKS1Q9NXB0 SENP3-202ENST00000429205 2222 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
MKS1Q9NXB0 PDE1C-205ENST00000396191 2952 ntAPPRIS ALT1 TSL 2 BASIC14.37□□□□□ -0.11
MKS1Q9NXB0 DAZL-201ENST00000250863 3104 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
MKS1Q9NXB0 LHX1-201ENST00000614239 3425 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
MKS1Q9NXB0 PDE2A-206ENST00000444035 4193 ntAPPRIS ALT1 TSL 5 BASIC14.37□□□□□ -0.11
MKS1Q9NXB0 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
MKS1Q9NXB0 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC14.36□□□□□ -0.11
MKS1Q9NXB0 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
MKS1Q9NXB0 SLC22A20-202ENST00000525437 3196 ntTSL 5 BASIC14.36□□□□□ -0.11
MKS1Q9NXB0 PPP3R1-201ENST00000234310 3023 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
MKS1Q9NXB0 ADORA2A-AS1-201ENST00000326341 2557 ntTSL 5 BASIC14.36□□□□□ -0.11
MKS1Q9NXB0 XIRP1-203ENST00000421646 2596 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
MKS1Q9NXB0 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
MKS1Q9NXB0 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
MKS1Q9NXB0 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC14.36□□□□□ -0.11
MKS1Q9NXB0 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
MKS1Q9NXB0 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC14.36□□□□□ -0.11
MKS1Q9NXB0 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
MKS1Q9NXB0 ZNF263-202ENST00000538765 1721 ntTSL 2 BASIC14.36□□□□□ -0.11
MKS1Q9NXB0 ENG-204ENST00000480266 2804 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
MKS1Q9NXB0 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC14.36□□□□□ -0.11
MKS1Q9NXB0 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
MKS1Q9NXB0 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC14.36□□□□□ -0.11
MKS1Q9NXB0 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
MKS1Q9NXB0 SCNN1A-215ENST00000540037 3040 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
MKS1Q9NXB0 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC14.36□□□□□ -0.11
MKS1Q9NXB0 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC14.36□□□□□ -0.11
MKS1Q9NXB0 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC14.36□□□□□ -0.11
MKS1Q9NXB0 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC14.36□□□□□ -0.11
MKS1Q9NXB0 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
MKS1Q9NXB0 PAM16-211ENST00000575848 518 ntTSL 3 BASIC14.36□□□□□ -0.11
MKS1Q9NXB0 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
MKS1Q9NXB0 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
MKS1Q9NXB0 CU634019.7-201ENST00000624153 1185 ntBASIC14.36□□□□□ -0.11
MKS1Q9NXB0 FP236241.2-201ENST00000624906 1185 ntBASIC14.36□□□□□ -0.11
MKS1Q9NXB0 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
MKS1Q9NXB0 FOXP3-204ENST00000455775 2448 ntTSL 5 BASIC14.36□□□□□ -0.11
MKS1Q9NXB0 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
MKS1Q9NXB0 TNPO2-218ENST00000592287 2914 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
MKS1Q9NXB0 UBE2F-223ENST00000612130 2135 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
MKS1Q9NXB0 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
MKS1Q9NXB0 AC051649.2-201ENST00000640310 3319 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
MKS1Q9NXB0 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
MKS1Q9NXB0 MAN2B1-203ENST00000456935 3184 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
MKS1Q9NXB0 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC14.36□□□□□ -0.11
MKS1Q9NXB0 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
MKS1Q9NXB0 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
MKS1Q9NXB0 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
MKS1Q9NXB0 POM121L4P-202ENST00000427789 1891 ntBASIC14.35□□□□□ -0.11
MKS1Q9NXB0 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
MKS1Q9NXB0 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
MKS1Q9NXB0 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC14.35□□□□□ -0.11
MKS1Q9NXB0 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
MKS1Q9NXB0 VPS52-212ENST00000445902 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
MKS1Q9NXB0 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC14.35□□□□□ -0.11
MKS1Q9NXB0 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC14.35□□□□□ -0.11
MKS1Q9NXB0 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
MKS1Q9NXB0 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
MKS1Q9NXB0 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
MKS1Q9NXB0 FUK-202ENST00000378912 3925 ntTSL 2 BASIC14.35□□□□□ -0.11
MKS1Q9NXB0 CLOCK-211ENST00000513440 3580 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 66.6 ms