Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 RPS15-202ENST00000585665 467 ntTSL 3 BASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 AL390754.1-201ENST00000619088 582 ntBASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 SMTN-203ENST00000358743 3198 ntAPPRIS P4 TSL 2 BASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 PEAR1-201ENST00000292357 4866 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 LPO-201ENST00000262290 2979 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 LRRC8A-203ENST00000372600 4355 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 C10orf105-202ENST00000441508 4836 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 USP2-201ENST00000260187 3732 ntAPPRIS P4 TSL 1 (best) BASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 FZD6-206ENST00000523739 2774 ntTSL 2 BASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 SYK-203ENST00000375751 4936 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 FLJ40288-201ENST00000332558 1998 ntTSL 2 BASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 MANBA-202ENST00000505239 2577 ntTSL 2 BASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 LDLRAD4-201ENST00000359446 8486 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 CREBL2-201ENST00000228865 3754 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 CAPN5-201ENST00000278559 4397 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 CNTNAP5-202ENST00000431078 5284 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 MYO7A-205ENST00000458637 7336 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CHMP1AQ9HD42 STIM1-201ENST00000300737 4038 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CHMP1AQ9HD42 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CHMP1AQ9HD42 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CHMP1AQ9HD42 CPLX2-201ENST00000359546 5023 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CHMP1AQ9HD42 UMODL1-205ENST00000408910 4878 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
CHMP1AQ9HD42 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CHMP1AQ9HD42 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CHMP1AQ9HD42 MFSD11-217ENST00000590514 1891 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CHMP1AQ9HD42 AL591122.2-201ENST00000624125 1853 ntBASIC12.66□□□□□ -0.38
CHMP1AQ9HD42 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC12.66□□□□□ -0.38
CHMP1AQ9HD42 KRBA2-202ENST00000396267 2562 ntTSL 2 BASIC12.66□□□□□ -0.38
CHMP1AQ9HD42 UQCRB-201ENST00000287022 5575 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CHMP1AQ9HD42 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC12.66□□□□□ -0.38
CHMP1AQ9HD42 LINC00863-201ENST00000439559 3287 ntTSL 5 BASIC12.66□□□□□ -0.38
CHMP1AQ9HD42 RTL5-202ENST00000609883 4105 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
CHMP1AQ9HD42 CACNA1G-219ENST00000507609 6849 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
CHMP1AQ9HD42 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CHMP1AQ9HD42 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
CHMP1AQ9HD42 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC12.66□□□□□ -0.38
CHMP1AQ9HD42 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC12.66□□□□□ -0.38
CHMP1AQ9HD42 HLA-K-203ENST00000430151 1046 ntBASIC12.66□□□□□ -0.38
CHMP1AQ9HD42 AL353779.1-201ENST00000434793 351 ntBASIC12.66□□□□□ -0.38
CHMP1AQ9HD42 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CHMP1AQ9HD42 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CHMP1AQ9HD42 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC12.66□□□□□ -0.38
CHMP1AQ9HD42 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC12.66□□□□□ -0.38
CHMP1AQ9HD42 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC12.66□□□□□ -0.38
CHMP1AQ9HD42 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC12.66□□□□□ -0.38
CHMP1AQ9HD42 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC12.66□□□□□ -0.38
CHMP1AQ9HD42 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC12.66□□□□□ -0.38
CHMP1AQ9HD42 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC12.66□□□□□ -0.38
CHMP1AQ9HD42 AC015911.4-201ENST00000588022 1070 ntBASIC12.66□□□□□ -0.38
CHMP1AQ9HD42 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC12.66□□□□□ -0.38
CHMP1AQ9HD42 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC12.66□□□□□ -0.38
CHMP1AQ9HD42 AL354702.1-201ENST00000442006 1960 ntBASIC12.66□□□□□ -0.38
CHMP1AQ9HD42 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC12.66□□□□□ -0.38
CHMP1AQ9HD42 ZNF318-201ENST00000361428 8006 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
CHMP1AQ9HD42 MRVI1-216ENST00000547195 6155 ntTSL 2 BASIC12.66□□□□□ -0.38
CHMP1AQ9HD42 SLC35C2-203ENST00000372227 2505 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CHMP1AQ9HD42 ACVR2A-201ENST00000241416 5728 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CHMP1AQ9HD42 AL512306.2-201ENST00000444037 2219 ntTSL 2 BASIC12.66□□□□□ -0.38
CHMP1AQ9HD42 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CHMP1AQ9HD42 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
CHMP1AQ9HD42 ARAP3-207ENST00000626478 4928 ntTSL 5 BASIC12.66□□□□□ -0.38
CHMP1AQ9HD42 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC12.66□□□□□ -0.38
CHMP1AQ9HD42 KIFC3-202ENST00000421376 3128 ntTSL 2 BASIC12.66□□□□□ -0.38
CHMP1AQ9HD42 SAMD15-201ENST00000216471 2564 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
CHMP1AQ9HD42 IL20RA-207ENST00000541547 3382 ntTSL 2 BASIC12.66□□□□□ -0.38
CHMP1AQ9HD42 NCLN-201ENST00000246117 4005 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CHMP1AQ9HD42 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 HS3ST1-201ENST00000002596 8031 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 AC093525.8-201ENST00000624099 1342 ntBASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 IRAK1BP1-201ENST00000369940 5656 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 AC113189.2-201ENST00000575310 1975 ntTSL 2 BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 GATAD2A-203ENST00000404158 5776 ntAPPRIS ALT1 TSL 2 BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 IL20RA-203ENST00000367748 3522 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 DRD5P1-201ENST00000456605 1438 ntBASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 C1orf167-202ENST00000433342 4545 ntAPPRIS P5 TSL 5 BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 SLC24A4-204ENST00000531433 4531 ntAPPRIS ALT2 TSL 2 BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC12.65□□□□□ -0.38
CHMP1AQ9HD42 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC12.65□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 65.7 ms