Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 GJB1-201ENST00000361726 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SHANK3Q9BYB0 Z82195.2-202ENST00000458525 1646 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SHANK3Q9BYB0 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SHANK3Q9BYB0 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
SHANK3Q9BYB0 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SHANK3Q9BYB0 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC18.13■□□□□ 0.49
SHANK3Q9BYB0 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SHANK3Q9BYB0 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC18.13■□□□□ 0.49
SHANK3Q9BYB0 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC18.12■□□□□ 0.49
SHANK3Q9BYB0 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC18.12■□□□□ 0.49
SHANK3Q9BYB0 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
SHANK3Q9BYB0 HIGD2A-201ENST00000274787 668 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SHANK3Q9BYB0 C6orf48-202ENST00000375635 610 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
SHANK3Q9BYB0 C6orf48-209ENST00000395789 952 ntAPPRIS P1 TSL 3 BASIC18.12■□□□□ 0.49
SHANK3Q9BYB0 SLC12A9-AS1-201ENST00000412754 369 ntTSL 3 BASIC18.12■□□□□ 0.49
SHANK3Q9BYB0 SLC5A4-AS1-201ENST00000434942 876 ntTSL 3 BASIC18.12■□□□□ 0.49
SHANK3Q9BYB0 RNLS-203ENST00000437752 525 ntTSL 2 BASIC18.12■□□□□ 0.49
SHANK3Q9BYB0 CITED1-209ENST00000453707 998 ntAPPRIS ALT2 TSL 3 BASIC18.12■□□□□ 0.49
SHANK3Q9BYB0 MIR4326-201ENST00000582203 59 ntBASIC18.12■□□□□ 0.49
SHANK3Q9BYB0 MECP2-213ENST00000622433 1071 ntTSL 5 BASIC18.12■□□□□ 0.49
SHANK3Q9BYB0 PSMA6-217ENST00000628955 364 ntTSL 5 BASIC18.12■□□□□ 0.49
SHANK3Q9BYB0 LINC01869-204ENST00000635639 1047 ntTSL 5 BASIC18.12■□□□□ 0.49
SHANK3Q9BYB0 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SHANK3Q9BYB0 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
SHANK3Q9BYB0 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SHANK3Q9BYB0 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SHANK3Q9BYB0 AC064850.1-201ENST00000413279 1398 ntBASIC18.12■□□□□ 0.49
SHANK3Q9BYB0 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SHANK3Q9BYB0 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
SHANK3Q9BYB0 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SHANK3Q9BYB0 AC104640.1-201ENST00000562617 2109 ntBASIC18.12■□□□□ 0.49
SHANK3Q9BYB0 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
SHANK3Q9BYB0 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SHANK3Q9BYB0 RERG-201ENST00000256953 2264 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SHANK3Q9BYB0 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
SHANK3Q9BYB0 AC012617.1-204ENST00000586340 2305 ntBASIC18.12■□□□□ 0.49
SHANK3Q9BYB0 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SHANK3Q9BYB0 AC008536.3-201ENST00000623282 1599 ntBASIC18.12■□□□□ 0.49
SHANK3Q9BYB0 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SHANK3Q9BYB0 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SHANK3Q9BYB0 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SHANK3Q9BYB0 PCLAF-202ENST00000380258 911 ntTSL 2 BASIC18.12■□□□□ 0.49
SHANK3Q9BYB0 TREX1-203ENST00000456089 629 ntTSL 3 BASIC18.12■□□□□ 0.49
SHANK3Q9BYB0 AC078814.4-201ENST00000546650 327 ntBASIC18.12■□□□□ 0.49
SHANK3Q9BYB0 LINC01490-202ENST00000551399 1260 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SHANK3Q9BYB0 AC132812.1-201ENST00000583145 892 ntBASIC18.12■□□□□ 0.49
SHANK3Q9BYB0 AC008747.1-201ENST00000592220 442 ntTSL 3 BASIC18.12■□□□□ 0.49
SHANK3Q9BYB0 AC016586.1-201ENST00000600056 684 ntTSL 3 BASIC18.12■□□□□ 0.49
SHANK3Q9BYB0 AC123912.6-201ENST00000612657 315 ntBASIC18.12■□□□□ 0.49
SHANK3Q9BYB0 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SHANK3Q9BYB0 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC18.12■□□□□ 0.49
SHANK3Q9BYB0 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
SHANK3Q9BYB0 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SHANK3Q9BYB0 CRISP2-201ENST00000339139 1382 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SHANK3Q9BYB0 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
SHANK3Q9BYB0 CPPED1-201ENST00000261660 1898 ntTSL 2 BASIC18.11■□□□□ 0.49
SHANK3Q9BYB0 CCNG2-202ENST00000395640 1410 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SHANK3Q9BYB0 FAM226B-201ENST00000602508 1490 ntBASIC18.11■□□□□ 0.49
SHANK3Q9BYB0 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
SHANK3Q9BYB0 TBC1D3P2-201ENST00000339120 1513 ntTSL 2 BASIC18.11■□□□□ 0.49
SHANK3Q9BYB0 PPP1R1B-203ENST00000394267 1504 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SHANK3Q9BYB0 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC18.11■□□□□ 0.49
SHANK3Q9BYB0 YPEL4-201ENST00000300022 1721 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SHANK3Q9BYB0 PHTF2-204ENST00000415251 1738 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SHANK3Q9BYB0 ZDHHC8-201ENST00000320602 3072 ntTSL 5 BASIC18.11■□□□□ 0.49
SHANK3Q9BYB0 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SHANK3Q9BYB0 KRTAP10-9-201ENST00000397911 1171 ntAPPRIS P2 BASIC18.11■□□□□ 0.49
SHANK3Q9BYB0 MPV17-209ENST00000405983 859 ntTSL 5 BASIC18.11■□□□□ 0.49
SHANK3Q9BYB0 TXNL4B-203ENST00000426362 965 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
SHANK3Q9BYB0 LINC00303-203ENST00000427799 1028 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SHANK3Q9BYB0 AC133141.1-201ENST00000443015 339 ntBASIC18.11■□□□□ 0.49
SHANK3Q9BYB0 BMF-206ENST00000558774 671 ntTSL 3 BASIC18.11■□□□□ 0.49
SHANK3Q9BYB0 AC009163.5-202ENST00000571737 466 ntTSL 3 BASIC18.11■□□□□ 0.49
SHANK3Q9BYB0 SEPT14P19-201ENST00000587432 336 ntTSL 2 BASIC18.11■□□□□ 0.49
SHANK3Q9BYB0 PRKACA-208ENST00000589994 1127 ntTSL 2 BASIC18.11■□□□□ 0.49
SHANK3Q9BYB0 BAP1-211ENST00000615113 489 ntBASIC18.11■□□□□ 0.49
SHANK3Q9BYB0 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SHANK3Q9BYB0 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC18.11■□□□□ 0.49
SHANK3Q9BYB0 AC024075.2-201ENST00000598112 1473 ntBASIC18.11■□□□□ 0.49
SHANK3Q9BYB0 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
SHANK3Q9BYB0 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
SHANK3Q9BYB0 DMC1-207ENST00000616615 1595 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SHANK3Q9BYB0 LHFPL1-201ENST00000371968 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SHANK3Q9BYB0 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SHANK3Q9BYB0 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHANK3Q9BYB0 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHANK3Q9BYB0 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
SHANK3Q9BYB0 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHANK3Q9BYB0 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHANK3Q9BYB0 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC18.1■□□□□ 0.49
SHANK3Q9BYB0 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHANK3Q9BYB0 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SHANK3Q9BYB0 DHRS7C-201ENST00000330255 1006 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHANK3Q9BYB0 PHACTR1-203ENST00000379335 943 ntTSL 2 BASIC18.1■□□□□ 0.49
SHANK3Q9BYB0 AL121656.1-201ENST00000440786 482 ntTSL 5 BASIC18.1■□□□□ 0.49
SHANK3Q9BYB0 IKBKB-223ENST00000522147 954 ntTSL 5 BASIC18.1■□□□□ 0.49
SHANK3Q9BYB0 Metazoa_SRP.75-201ENST00000614439 293 ntBASIC18.1■□□□□ 0.49
SHANK3Q9BYB0 AC005746.3-201ENST00000614751 393 ntBASIC18.1■□□□□ 0.49
SHANK3Q9BYB0 AL139424.3-202ENST00000641619 917 ntBASIC18.1■□□□□ 0.49
SHANK3Q9BYB0 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms