Protein–RNA interactions for Protein: Q5VTR2

RNF20, E3 ubiquitin-protein ligase BRE1A, humanhuman

Predictions only

Length 975 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF20Q5VTR2 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
RNF20Q5VTR2 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
RNF20Q5VTR2 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
RNF20Q5VTR2 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC17.42■□□□□ 0.38
RNF20Q5VTR2 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
RNF20Q5VTR2 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
RNF20Q5VTR2 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC17.42■□□□□ 0.38
RNF20Q5VTR2 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
RNF20Q5VTR2 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
RNF20Q5VTR2 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
RNF20Q5VTR2 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
RNF20Q5VTR2 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
RNF20Q5VTR2 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
RNF20Q5VTR2 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
RNF20Q5VTR2 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC17.42■□□□□ 0.38
RNF20Q5VTR2 AC005034.1-201ENST00000426657 489 ntBASIC17.42■□□□□ 0.38
RNF20Q5VTR2 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC17.42■□□□□ 0.38
RNF20Q5VTR2 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
RNF20Q5VTR2 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
RNF20Q5VTR2 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
RNF20Q5VTR2 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC17.42■□□□□ 0.38
RNF20Q5VTR2 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
RNF20Q5VTR2 AC132192.2-201ENST00000596206 1147 ntBASIC17.42■□□□□ 0.38
RNF20Q5VTR2 WNT11-204ENST00000621122 789 ntTSL 5 BASIC17.42■□□□□ 0.38
RNF20Q5VTR2 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
RNF20Q5VTR2 ARHGAP23P1-201ENST00000562773 1937 ntBASIC17.42■□□□□ 0.38
RNF20Q5VTR2 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC17.42■□□□□ 0.38
RNF20Q5VTR2 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
RNF20Q5VTR2 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
RNF20Q5VTR2 AC063926.2-201ENST00000623766 1308 ntBASIC17.42■□□□□ 0.38
RNF20Q5VTR2 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC17.42■□□□□ 0.38
RNF20Q5VTR2 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
RNF20Q5VTR2 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC17.42■□□□□ 0.38
RNF20Q5VTR2 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
RNF20Q5VTR2 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
RNF20Q5VTR2 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
RNF20Q5VTR2 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
RNF20Q5VTR2 AC138969.2-201ENST00000532739 9932 ntBASIC17.41■□□□□ 0.38
RNF20Q5VTR2 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
RNF20Q5VTR2 AC011474.4-201ENST00000623523 2076 ntBASIC17.41■□□□□ 0.38
RNF20Q5VTR2 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
RNF20Q5VTR2 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC17.41■□□□□ 0.38
RNF20Q5VTR2 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
RNF20Q5VTR2 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
RNF20Q5VTR2 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC17.41■□□□□ 0.38
RNF20Q5VTR2 BEND3P1-201ENST00000421591 1944 ntBASIC17.41■□□□□ 0.38
RNF20Q5VTR2 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RNF20Q5VTR2 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC17.41■□□□□ 0.38
RNF20Q5VTR2 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
RNF20Q5VTR2 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC17.41■□□□□ 0.38
RNF20Q5VTR2 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
RNF20Q5VTR2 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
RNF20Q5VTR2 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
RNF20Q5VTR2 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
RNF20Q5VTR2 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC17.41■□□□□ 0.38
RNF20Q5VTR2 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RNF20Q5VTR2 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
RNF20Q5VTR2 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RNF20Q5VTR2 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC17.41■□□□□ 0.38
RNF20Q5VTR2 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
RNF20Q5VTR2 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
RNF20Q5VTR2 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC17.41■□□□□ 0.38
RNF20Q5VTR2 U91328.1-201ENST00000437528 223 ntBASIC17.41■□□□□ 0.38
RNF20Q5VTR2 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC17.41■□□□□ 0.38
RNF20Q5VTR2 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC17.41■□□□□ 0.38
RNF20Q5VTR2 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC17.41■□□□□ 0.38
RNF20Q5VTR2 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RNF20Q5VTR2 AC104506.1-201ENST00000609247 429 ntBASIC17.41■□□□□ 0.38
RNF20Q5VTR2 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC17.41■□□□□ 0.38
RNF20Q5VTR2 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC17.41■□□□□ 0.38
RNF20Q5VTR2 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC17.41■□□□□ 0.38
RNF20Q5VTR2 TUBB8P4-201ENST00000511806 1324 ntBASIC17.41■□□□□ 0.38
RNF20Q5VTR2 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
RNF20Q5VTR2 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
RNF20Q5VTR2 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RNF20Q5VTR2 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
RNF20Q5VTR2 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
RNF20Q5VTR2 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
RNF20Q5VTR2 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC17.4■□□□□ 0.38
RNF20Q5VTR2 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
RNF20Q5VTR2 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
RNF20Q5VTR2 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
RNF20Q5VTR2 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
RNF20Q5VTR2 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
RNF20Q5VTR2 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
RNF20Q5VTR2 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
RNF20Q5VTR2 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
RNF20Q5VTR2 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
RNF20Q5VTR2 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
RNF20Q5VTR2 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
RNF20Q5VTR2 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
RNF20Q5VTR2 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
RNF20Q5VTR2 TPO-206ENST00000382269 1155 ntTSL 5 BASIC17.4■□□□□ 0.38
RNF20Q5VTR2 AC079776.1-201ENST00000401540 1152 ntBASIC17.4■□□□□ 0.38
RNF20Q5VTR2 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC17.4■□□□□ 0.38
RNF20Q5VTR2 AC079178.1-201ENST00000420915 656 ntBASIC17.4■□□□□ 0.38
RNF20Q5VTR2 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC17.4■□□□□ 0.38
RNF20Q5VTR2 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC17.4■□□□□ 0.38
RNF20Q5VTR2 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC17.4■□□□□ 0.38
RNF20Q5VTR2 HNRNPA1P48-202ENST00000565308 961 ntBASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 54.4 ms