Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC88AQ3V6T2 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC17.39■□□□□ 0.37
CCDC88AQ3V6T2 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC88AQ3V6T2 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC88AQ3V6T2 HR-201ENST00000312841 5351 ntTSL 5 BASIC17.39■□□□□ 0.37
CCDC88AQ3V6T2 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC88AQ3V6T2 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC88AQ3V6T2 NHP2P1-201ENST00000335274 462 ntBASIC17.39■□□□□ 0.37
CCDC88AQ3V6T2 HIST1H2BK-201ENST00000356950 381 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
CCDC88AQ3V6T2 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC88AQ3V6T2 CU639417.1-201ENST00000464664 460 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
CCDC88AQ3V6T2 AC145422.1-201ENST00000541574 544 ntTSL 3 BASIC17.39■□□□□ 0.37
CCDC88AQ3V6T2 LINC02252-201ENST00000565706 487 ntTSL 3 BASIC17.39■□□□□ 0.37
CCDC88AQ3V6T2 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC17.39■□□□□ 0.37
CCDC88AQ3V6T2 MED11-202ENST00000573708 802 ntTSL 2 BASIC17.39■□□□□ 0.37
CCDC88AQ3V6T2 TYMSP2-201ENST00000589501 424 ntBASIC17.39■□□□□ 0.37
CCDC88AQ3V6T2 AC006116.2-201ENST00000589958 988 ntBASIC17.39■□□□□ 0.37
CCDC88AQ3V6T2 H2BFS-201ENST00000599962 460 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
CCDC88AQ3V6T2 AC005274.1-201ENST00000623460 802 ntBASIC17.39■□□□□ 0.37
CCDC88AQ3V6T2 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
CCDC88AQ3V6T2 AC215219.1-201ENST00000400706 1817 ntBASIC17.39■□□□□ 0.37
CCDC88AQ3V6T2 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC88AQ3V6T2 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC88AQ3V6T2 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC88AQ3V6T2 LAP3P2-201ENST00000454686 1454 ntBASIC17.39■□□□□ 0.37
CCDC88AQ3V6T2 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC88AQ3V6T2 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC88AQ3V6T2 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC88AQ3V6T2 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC88AQ3V6T2 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC88AQ3V6T2 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
CCDC88AQ3V6T2 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC88AQ3V6T2 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC88AQ3V6T2 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC88AQ3V6T2 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC88AQ3V6T2 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC88AQ3V6T2 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC88AQ3V6T2 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC17.38■□□□□ 0.37
CCDC88AQ3V6T2 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC17.38■□□□□ 0.37
CCDC88AQ3V6T2 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC88AQ3V6T2 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC88AQ3V6T2 MRPS11-202ENST00000353598 766 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC88AQ3V6T2 NQO2-204ENST00000380454 851 ntTSL 2 BASIC17.38■□□□□ 0.37
CCDC88AQ3V6T2 AP000354.1-201ENST00000396982 456 ntBASIC17.38■□□□□ 0.37
CCDC88AQ3V6T2 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC88AQ3V6T2 PSAT1P2-201ENST00000426107 972 ntBASIC17.38■□□□□ 0.37
CCDC88AQ3V6T2 GNAT1-202ENST00000433068 1224 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
CCDC88AQ3V6T2 CDCA4P4-201ENST00000435216 680 ntBASIC17.38■□□□□ 0.37
CCDC88AQ3V6T2 IKBKB-223ENST00000522147 954 ntTSL 5 BASIC17.38■□□□□ 0.37
CCDC88AQ3V6T2 CTBP2P6-201ENST00000526402 1229 ntBASIC17.38■□□□□ 0.37
CCDC88AQ3V6T2 BLOC1S1-202ENST00000548556 525 ntTSL 2 BASIC17.38■□□□□ 0.37
CCDC88AQ3V6T2 CR383656.13-201ENST00000550928 563 ntTSL 3 BASIC17.38■□□□□ 0.37
CCDC88AQ3V6T2 AL512310.10-201ENST00000555580 563 ntTSL 3 BASIC17.38■□□□□ 0.37
CCDC88AQ3V6T2 AC139099.2-201ENST00000572343 641 ntTSL 3 BASIC17.38■□□□□ 0.37
CCDC88AQ3V6T2 HNRNPA1P16-201ENST00000575692 955 ntBASIC17.38■□□□□ 0.37
CCDC88AQ3V6T2 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC17.38■□□□□ 0.37
CCDC88AQ3V6T2 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC88AQ3V6T2 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC88AQ3V6T2 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
CCDC88AQ3V6T2 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
CCDC88AQ3V6T2 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC17.38■□□□□ 0.37
CCDC88AQ3V6T2 AC106707.1-201ENST00000475981 1640 ntTSL 2 BASIC17.38■□□□□ 0.37
CCDC88AQ3V6T2 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC88AQ3V6T2 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC88AQ3V6T2 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC17.38■□□□□ 0.37
CCDC88AQ3V6T2 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC17.38■□□□□ 0.37
CCDC88AQ3V6T2 C21orf62-204ENST00000490358 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC88AQ3V6T2 HOXC-AS3-203ENST00000514702 368 ntTSL 3 BASIC17.37■□□□□ 0.37
CCDC88AQ3V6T2 AC016266.1-201ENST00000557558 729 ntTSL 3 BASIC17.37■□□□□ 0.37
CCDC88AQ3V6T2 AC092756.1-201ENST00000560248 448 ntTSL 3 BASIC17.37■□□□□ 0.37
CCDC88AQ3V6T2 SRP14-208ENST00000560773 468 ntTSL 3 BASIC17.37■□□□□ 0.37
CCDC88AQ3V6T2 C1orf232-202ENST00000635463 466 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
CCDC88AQ3V6T2 GNG14-201ENST00000640117 210 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
CCDC88AQ3V6T2 KCTD18-202ENST00000409157 2556 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC88AQ3V6T2 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC88AQ3V6T2 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC88AQ3V6T2 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC88AQ3V6T2 MRPS10-201ENST00000053468 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC88AQ3V6T2 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC88AQ3V6T2 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC88AQ3V6T2 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
CCDC88AQ3V6T2 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC88AQ3V6T2 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC88AQ3V6T2 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC17.37■□□□□ 0.37
CCDC88AQ3V6T2 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC17.37■□□□□ 0.37
CCDC88AQ3V6T2 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC88AQ3V6T2 BTNL8-211ENST00000610640 1488 ntTSL 5 BASIC17.37■□□□□ 0.37
CCDC88AQ3V6T2 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC88AQ3V6T2 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC88AQ3V6T2 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC88AQ3V6T2 AC090505.1-201ENST00000430515 1834 ntBASIC17.37■□□□□ 0.37
CCDC88AQ3V6T2 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC88AQ3V6T2 SAT1-201ENST00000379251 801 ntTSL 2 BASIC17.37■□□□□ 0.37
CCDC88AQ3V6T2 SAT1-202ENST00000379253 909 ntTSL 2 BASIC17.37■□□□□ 0.37
CCDC88AQ3V6T2 SAT1-203ENST00000379254 868 ntTSL 3 BASIC17.37■□□□□ 0.37
CCDC88AQ3V6T2 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC88AQ3V6T2 KRTAP4-12-201ENST00000394014 1077 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
CCDC88AQ3V6T2 COLEC11-204ENST00000402794 1134 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC88AQ3V6T2 RANGRF-202ENST00000407006 1074 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC88AQ3V6T2 RPL3P2-204ENST00000413027 1203 ntBASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 54 ms