Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 BLOC1S1-202ENST00000548556 525 ntTSL 2 BASIC23.53■■□□□ 1.36
CUX1P39880 AC008747.1-201ENST00000592220 442 ntTSL 3 BASIC23.53■■□□□ 1.36
CUX1P39880 NNMT-203ENST00000535401 1867 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
CUX1P39880 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC23.53■■□□□ 1.36
CUX1P39880 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC23.53■■□□□ 1.36
CUX1P39880 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC23.52■■□□□ 1.36
CUX1P39880 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC23.52■■□□□ 1.36
CUX1P39880 DACT3-AS1-201ENST00000500689 1304 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
CUX1P39880 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
CUX1P39880 LHFPL1-201ENST00000371968 1675 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
CUX1P39880 ART3-201ENST00000341029 1517 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
CUX1P39880 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC23.52■■□□□ 1.36
CUX1P39880 SFT2D2-202ENST00000367829 491 ntTSL 5 BASIC23.52■■□□□ 1.36
CUX1P39880 AL022332.1-202ENST00000432495 426 ntTSL 3 BASIC23.52■■□□□ 1.36
CUX1P39880 HNRNPA1P42-201ENST00000458678 957 ntBASIC23.52■■□□□ 1.36
CUX1P39880 MIR2278-201ENST00000516344 96 ntBASIC23.52■■□□□ 1.36
CUX1P39880 AC009163.5-202ENST00000571737 466 ntTSL 3 BASIC23.52■■□□□ 1.36
CUX1P39880 RN7SL121P-201ENST00000584223 273 ntBASIC23.52■■□□□ 1.36
CUX1P39880 GSTT2-202ENST00000621118 1112 ntTSL 5 BASIC23.52■■□□□ 1.36
CUX1P39880 GNG14-201ENST00000640117 210 ntAPPRIS P1 TSL 5 BASIC23.52■■□□□ 1.36
CUX1P39880 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC23.52■■□□□ 1.36
CUX1P39880 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC23.52■■□□□ 1.36
CUX1P39880 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
CUX1P39880 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC23.52■■□□□ 1.36
CUX1P39880 ERP29-202ENST00000455836 1333 ntTSL 2 BASIC23.52■■□□□ 1.36
CUX1P39880 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC23.52■■□□□ 1.35
CUX1P39880 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
CUX1P39880 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC23.51■■□□□ 1.35
CUX1P39880 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC23.51■■□□□ 1.35
CUX1P39880 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC23.51■■□□□ 1.35
CUX1P39880 SNCAIP-206ENST00000414317 1591 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
CUX1P39880 NME7-203ENST00000472647 1590 ntAPPRIS ALT2 TSL 2 BASIC23.51■■□□□ 1.35
CUX1P39880 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
CUX1P39880 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC23.51■■□□□ 1.35
CUX1P39880 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC23.51■■□□□ 1.35
CUX1P39880 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
CUX1P39880 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC23.51■■□□□ 1.35
CUX1P39880 NHP2P1-201ENST00000335274 462 ntBASIC23.51■■□□□ 1.35
CUX1P39880 AC079250.1-201ENST00000456046 531 ntBASIC23.51■■□□□ 1.35
CUX1P39880 AC078852.1-201ENST00000515842 441 ntTSL 3 BASIC23.51■■□□□ 1.35
CUX1P39880 IKBKB-223ENST00000522147 954 ntTSL 5 BASIC23.51■■□□□ 1.35
CUX1P39880 AC011489.1-201ENST00000586744 690 ntTSL 3 BASIC23.51■■□□□ 1.35
CUX1P39880 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
CUX1P39880 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
CUX1P39880 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC23.51■■□□□ 1.35
CUX1P39880 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC23.51■■□□□ 1.35
CUX1P39880 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
CUX1P39880 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC23.51■■□□□ 1.35
CUX1P39880 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC23.51■■□□□ 1.35
CUX1P39880 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
CUX1P39880 CHIT1-201ENST00000255427 1598 ntTSL 2 BASIC23.51■■□□□ 1.35
CUX1P39880 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
CUX1P39880 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC23.51■■□□□ 1.35
CUX1P39880 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
CUX1P39880 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
CUX1P39880 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
CUX1P39880 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC23.5■■□□□ 1.35
CUX1P39880 COX8A-201ENST00000314133 507 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
CUX1P39880 AL591242.1-201ENST00000422284 343 ntTSL 2 BASIC23.5■■□□□ 1.35
CUX1P39880 KRT8P30-201ENST00000432100 650 ntBASIC23.5■■□□□ 1.35
CUX1P39880 AL136084.1-201ENST00000449172 318 ntBASIC23.5■■□□□ 1.35
CUX1P39880 LINC01490-202ENST00000551399 1260 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
CUX1P39880 IFI27L1-212ENST00000557218 413 ntTSL 3 BASIC23.5■■□□□ 1.35
CUX1P39880 AC091304.3-201ENST00000566500 716 ntBASIC23.5■■□□□ 1.35
CUX1P39880 POLR2E-204ENST00000586746 1096 ntAPPRIS P1 TSL 3 BASIC23.5■■□□□ 1.35
CUX1P39880 HAMP-203ENST00000598398 652 ntAPPRIS P1 TSL 2 BASIC23.5■■□□□ 1.35
CUX1P39880 AC080013.5-201ENST00000607044 679 ntBASIC23.5■■□□□ 1.35
CUX1P39880 MECP2-213ENST00000622433 1071 ntTSL 5 BASIC23.5■■□□□ 1.35
CUX1P39880 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC23.5■■□□□ 1.35
CUX1P39880 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC23.5■■□□□ 1.35
CUX1P39880 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
CUX1P39880 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
CUX1P39880 WASH7P-201ENST00000488147 1351 ntBASIC23.5■■□□□ 1.35
CUX1P39880 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC23.5■■□□□ 1.35
CUX1P39880 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC23.5■■□□□ 1.35
CUX1P39880 CPPED1-201ENST00000261660 1898 ntTSL 2 BASIC23.5■■□□□ 1.35
CUX1P39880 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
CUX1P39880 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC23.5■■□□□ 1.35
CUX1P39880 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC23.49■■□□□ 1.35
CUX1P39880 C6orf48-202ENST00000375635 610 ntAPPRIS P1 TSL 2 BASIC23.49■■□□□ 1.35
CUX1P39880 C6orf48-209ENST00000395789 952 ntAPPRIS P1 TSL 3 BASIC23.49■■□□□ 1.35
CUX1P39880 ATRAID-202ENST00000405489 1059 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
CUX1P39880 RPL18AP16-201ENST00000424057 531 ntBASIC23.49■■□□□ 1.35
CUX1P39880 TONSL-AS1-201ENST00000442850 428 ntTSL 5 BASIC23.49■■□□□ 1.35
CUX1P39880 BX322557.2-201ENST00000445242 379 ntTSL 3 BASIC23.49■■□□□ 1.35
CUX1P39880 AC078785.1-204ENST00000460707 764 ntTSL 3 BASIC23.49■■□□□ 1.35
CUX1P39880 TBC1D3P6-201ENST00000505954 962 ntBASIC23.49■■□□□ 1.35
CUX1P39880 AC023090.1-201ENST00000592906 502 ntTSL 3 BASIC23.49■■□□□ 1.35
CUX1P39880 MCM8-AS1-201ENST00000613522 983 ntTSL 2 BASIC23.49■■□□□ 1.35
CUX1P39880 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
CUX1P39880 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC23.49■■□□□ 1.35
CUX1P39880 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
CUX1P39880 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC23.49■■□□□ 1.35
CUX1P39880 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
CUX1P39880 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
CUX1P39880 SUCLA2-205ENST00000470760 1445 ntTSL 2 BASIC23.49■■□□□ 1.35
CUX1P39880 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC23.49■■□□□ 1.35
CUX1P39880 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC23.49■■□□□ 1.35
CUX1P39880 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC23.49■■□□□ 1.35
CUX1P39880 DHRS7C-201ENST00000330255 1006 ntAPPRIS P3 TSL 1 (best) BASIC23.49■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 54.7 ms