Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 PTOV1-AS2-203ENST00000601893 719 ntTSL 4 BASIC12.72□□□□□ -0.37
COL8A1P27658 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL8A1P27658 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC12.72□□□□□ -0.37
COL8A1P27658 IQSEC2-207ENST00000638583 722 ntTSL 5 BASIC12.72□□□□□ -0.37
COL8A1P27658 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL8A1P27658 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
COL8A1P27658 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC12.72□□□□□ -0.37
COL8A1P27658 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL8A1P27658 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL8A1P27658 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
COL8A1P27658 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC12.72□□□□□ -0.37
COL8A1P27658 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
COL8A1P27658 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL8A1P27658 AL672207.1-201ENST00000328462 1570 ntBASIC12.72□□□□□ -0.37
COL8A1P27658 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC12.72□□□□□ -0.37
COL8A1P27658 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL8A1P27658 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL8A1P27658 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
COL8A1P27658 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL8A1P27658 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL8A1P27658 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL8A1P27658 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL8A1P27658 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
COL8A1P27658 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL8A1P27658 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL8A1P27658 AC126177.1-201ENST00000547829 2218 ntBASIC12.72□□□□□ -0.37
COL8A1P27658 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
COL8A1P27658 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC12.71□□□□□ -0.37
COL8A1P27658 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC12.71□□□□□ -0.37
COL8A1P27658 ZNF436-AS1-201ENST00000335648 2547 ntBASIC12.71□□□□□ -0.37
COL8A1P27658 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC12.71□□□□□ -0.37
COL8A1P27658 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
COL8A1P27658 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC12.71□□□□□ -0.37
COL8A1P27658 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
COL8A1P27658 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
COL8A1P27658 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC12.71□□□□□ -0.37
COL8A1P27658 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
COL8A1P27658 FES-204ENST00000414248 2327 ntTSL 2 BASIC12.71□□□□□ -0.37
COL8A1P27658 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC12.71□□□□□ -0.37
COL8A1P27658 LAMP5-202ENST00000427562 1309 ntTSL 2 BASIC12.71□□□□□ -0.37
COL8A1P27658 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
COL8A1P27658 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.37
COL8A1P27658 AL596087.1-201ENST00000400979 1969 ntBASIC12.71□□□□□ -0.37
COL8A1P27658 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
COL8A1P27658 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
COL8A1P27658 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
COL8A1P27658 GTF3C6-201ENST00000329970 952 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
COL8A1P27658 TRBV4-1-201ENST00000390357 373 ntAPPRIS P1 BASIC12.71□□□□□ -0.37
COL8A1P27658 TRBV4-2-201ENST00000390392 455 ntAPPRIS P1 BASIC12.71□□□□□ -0.37
COL8A1P27658 NUPL2-202ENST00000410002 680 ntTSL 2 BASIC12.71□□□□□ -0.37
COL8A1P27658 AC093673.1-201ENST00000429630 648 ntTSL 2 BASIC12.71□□□□□ -0.37
COL8A1P27658 GNAT1-202ENST00000433068 1224 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
COL8A1P27658 AL583839.1-201ENST00000445280 691 ntTSL 3 BASIC12.71□□□□□ -0.37
COL8A1P27658 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC12.71□□□□□ -0.37
COL8A1P27658 AC006529.1-201ENST00000459978 637 ntBASIC12.71□□□□□ -0.37
COL8A1P27658 AC026470.1-201ENST00000478038 846 ntBASIC12.71□□□□□ -0.37
COL8A1P27658 CALCA-205ENST00000486207 851 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
COL8A1P27658 AC083801.1-201ENST00000491689 358 ntBASIC12.71□□□□□ -0.37
COL8A1P27658 HMGB3P14-201ENST00000494195 599 ntBASIC12.71□□□□□ -0.37
COL8A1P27658 LINC02228-201ENST00000507600 534 ntTSL 2 BASIC12.71□□□□□ -0.37
COL8A1P27658 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC12.71□□□□□ -0.37
COL8A1P27658 AC009712.1-201ENST00000564938 316 ntBASIC12.71□□□□□ -0.37
COL8A1P27658 AP005899.1-201ENST00000579467 544 ntTSL 3 BASIC12.71□□□□□ -0.37
COL8A1P27658 APOC4-202ENST00000592954 615 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
COL8A1P27658 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC12.71□□□□□ -0.37
COL8A1P27658 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
COL8A1P27658 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
COL8A1P27658 OXA1L-212ENST00000604262 1571 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
COL8A1P27658 API5-208ENST00000531273 1868 ntTSL 2 BASIC12.71□□□□□ -0.37
COL8A1P27658 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
COL8A1P27658 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC12.71□□□□□ -0.37
COL8A1P27658 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
COL8A1P27658 F10-201ENST00000375551 1509 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
COL8A1P27658 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC12.71□□□□□ -0.38
COL8A1P27658 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.38
COL8A1P27658 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.38
COL8A1P27658 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.38
COL8A1P27658 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
COL8A1P27658 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
COL8A1P27658 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC12.71□□□□□ -0.38
COL8A1P27658 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
COL8A1P27658 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.38
COL8A1P27658 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
COL8A1P27658 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC12.71□□□□□ -0.38
COL8A1P27658 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.38
COL8A1P27658 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
COL8A1P27658 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
COL8A1P27658 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
COL8A1P27658 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.38
COL8A1P27658 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC12.71□□□□□ -0.38
COL8A1P27658 ILF3-AS1-201ENST00000591501 1983 ntBASIC12.7□□□□□ -0.38
COL8A1P27658 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
COL8A1P27658 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
COL8A1P27658 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
COL8A1P27658 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
COL8A1P27658 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
COL8A1P27658 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
COL8A1P27658 LAIR1-209ENST00000434277 1645 ntAPPRIS ALT2 TSL 2 BASIC12.7□□□□□ -0.38
COL8A1P27658 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
COL8A1P27658 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC12.7□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 121.4 ms