Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 AL080243.1-201ENST00000423293 1060 ntBASIC17.95■□□□□ 0.46
RC3H1Q5TC82 SGO1-AS1-201ENST00000441442 499 ntTSL 4 BASIC17.95■□□□□ 0.46
RC3H1Q5TC82 RN7SL288P-201ENST00000490496 291 ntBASIC17.95■□□□□ 0.46
RC3H1Q5TC82 TPM1-220ENST00000559556 977 ntAPPRIS ALT1 TSL 2 BASIC17.95■□□□□ 0.46
RC3H1Q5TC82 LINC01543-201ENST00000578367 900 ntTSL 5 BASIC17.95■□□□□ 0.46
RC3H1Q5TC82 CD79B-201ENST00000006750 1269 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RC3H1Q5TC82 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
RC3H1Q5TC82 C20orf96-202ENST00000382369 1420 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
RC3H1Q5TC82 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
RC3H1Q5TC82 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
RC3H1Q5TC82 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC17.95■□□□□ 0.46
RC3H1Q5TC82 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
RC3H1Q5TC82 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RC3H1Q5TC82 SLC50A1-203ENST00000368404 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RC3H1Q5TC82 NIFK-AS1-203ENST00000419902 1316 ntTSL 2 BASIC17.95■□□□□ 0.46
RC3H1Q5TC82 CLEC20A-202ENST00000623247 1491 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
RC3H1Q5TC82 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
RC3H1Q5TC82 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
RC3H1Q5TC82 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC17.94■□□□□ 0.46
RC3H1Q5TC82 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC17.94■□□□□ 0.46
RC3H1Q5TC82 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
RC3H1Q5TC82 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC17.94■□□□□ 0.46
RC3H1Q5TC82 NCF4-201ENST00000248899 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
RC3H1Q5TC82 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
RC3H1Q5TC82 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC17.94■□□□□ 0.46
RC3H1Q5TC82 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
RC3H1Q5TC82 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
RC3H1Q5TC82 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
RC3H1Q5TC82 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
RC3H1Q5TC82 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
RC3H1Q5TC82 MT1H-201ENST00000332374 397 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
RC3H1Q5TC82 G0S2-201ENST00000367029 866 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
RC3H1Q5TC82 PIFO-201ENST00000369737 746 ntTSL 2 BASIC17.94■□□□□ 0.46
RC3H1Q5TC82 TCEA3-201ENST00000374601 1197 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
RC3H1Q5TC82 AP001628.2-201ENST00000420273 784 ntTSL 2 BASIC17.94■□□□□ 0.46
RC3H1Q5TC82 AL512599.1-201ENST00000430724 685 ntBASIC17.94■□□□□ 0.46
RC3H1Q5TC82 AL356218.1-201ENST00000450864 353 ntTSL 3 BASIC17.94■□□□□ 0.46
RC3H1Q5TC82 S100A2-205ENST00000487430 752 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
RC3H1Q5TC82 PAX5-210ENST00000520281 969 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
RC3H1Q5TC82 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC17.94■□□□□ 0.46
RC3H1Q5TC82 AC074050.2-201ENST00000563338 538 ntTSL 3 BASIC17.94■□□□□ 0.46
RC3H1Q5TC82 LINC02252-201ENST00000565706 487 ntTSL 3 BASIC17.94■□□□□ 0.46
RC3H1Q5TC82 AC103808.3-201ENST00000579714 598 ntTSL 5 BASIC17.94■□□□□ 0.46
RC3H1Q5TC82 ZNF571-AS1-204ENST00000587121 822 ntTSL 3 BASIC17.94■□□□□ 0.46
RC3H1Q5TC82 AC005498.2-204ENST00000590613 413 ntTSL 3 BASIC17.94■□□□□ 0.46
RC3H1Q5TC82 HKR1-220ENST00000591259 734 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
RC3H1Q5TC82 TP53-221ENST00000615910 1149 ntTSL 5 BASIC17.94■□□□□ 0.46
RC3H1Q5TC82 AC005274.1-201ENST00000623460 802 ntBASIC17.94■□□□□ 0.46
RC3H1Q5TC82 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC17.94■□□□□ 0.46
RC3H1Q5TC82 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC17.94■□□□□ 0.46
RC3H1Q5TC82 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
RC3H1Q5TC82 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC17.94■□□□□ 0.46
RC3H1Q5TC82 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC17.94■□□□□ 0.46
RC3H1Q5TC82 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
RC3H1Q5TC82 ENPP7P8-202ENST00000527856 1345 ntBASIC17.94■□□□□ 0.46
RC3H1Q5TC82 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC17.94■□□□□ 0.46
RC3H1Q5TC82 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
RC3H1Q5TC82 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC17.93■□□□□ 0.46
RC3H1Q5TC82 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
RC3H1Q5TC82 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC17.93■□□□□ 0.46
RC3H1Q5TC82 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
RC3H1Q5TC82 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC17.93■□□□□ 0.46
RC3H1Q5TC82 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC17.93■□□□□ 0.46
RC3H1Q5TC82 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
RC3H1Q5TC82 CERCAM-214ENST00000613052 1429 ntTSL 5 BASIC17.93■□□□□ 0.46
RC3H1Q5TC82 RNF34-211ENST00000613529 1449 ntTSL 2 BASIC17.93■□□□□ 0.46
RC3H1Q5TC82 KCNK9-201ENST00000303015 1245 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
RC3H1Q5TC82 BCL2L11-202ENST00000337565 720 ntTSL 5 BASIC17.93■□□□□ 0.46
RC3H1Q5TC82 ZNF614-202ENST00000356322 1293 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
RC3H1Q5TC82 HIST1H2BF-201ENST00000356530 1196 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
RC3H1Q5TC82 SSR4-202ENST00000370085 526 ntTSL 2 BASIC17.93■□□□□ 0.46
RC3H1Q5TC82 AC092570.1-201ENST00000414446 469 ntBASIC17.93■□□□□ 0.46
RC3H1Q5TC82 LINP1-201ENST00000417112 917 ntTSL 2 BASIC17.93■□□□□ 0.46
RC3H1Q5TC82 AL121983.2-202ENST00000419983 535 ntTSL 3 BASIC17.93■□□□□ 0.46
RC3H1Q5TC82 IQCF4-202ENST00000422896 745 ntTSL 2 BASIC17.93■□□□□ 0.46
RC3H1Q5TC82 CCDC12-202ENST00000425441 1097 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
RC3H1Q5TC82 AC093609.1-201ENST00000434020 952 ntTSL 2 BASIC17.93■□□□□ 0.46
RC3H1Q5TC82 AL583839.1-201ENST00000445280 691 ntTSL 3 BASIC17.93■□□□□ 0.46
RC3H1Q5TC82 GS1-124K5.4-201ENST00000445681 540 ntTSL 2 BASIC17.93■□□□□ 0.46
RC3H1Q5TC82 BCRP4-201ENST00000506079 804 ntBASIC17.93■□□□□ 0.46
RC3H1Q5TC82 AC090152.1-203ENST00000517898 1106 ntTSL 2 BASIC17.93■□□□□ 0.46
RC3H1Q5TC82 ZNF737-204ENST00000596797 569 ntTSL 4 BASIC17.93■□□□□ 0.46
RC3H1Q5TC82 AC017033.1-201ENST00000603720 708 ntTSL 2 BASIC17.93■□□□□ 0.46
RC3H1Q5TC82 IDH3A-224ENST00000629769 114 ntTSL 5 BASIC17.93■□□□□ 0.46
RC3H1Q5TC82 CASP16P-204ENST00000635032 809 ntBASIC17.93■□□□□ 0.46
RC3H1Q5TC82 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
RC3H1Q5TC82 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
RC3H1Q5TC82 ATP5A1-215ENST00000590665 1793 ntTSL 2 BASIC17.93■□□□□ 0.46
RC3H1Q5TC82 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
RC3H1Q5TC82 AC018529.2-202ENST00000611482 3087 ntBASIC17.93■□□□□ 0.46
RC3H1Q5TC82 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC17.93■□□□□ 0.46
RC3H1Q5TC82 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
RC3H1Q5TC82 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
RC3H1Q5TC82 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
RC3H1Q5TC82 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
RC3H1Q5TC82 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
RC3H1Q5TC82 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
RC3H1Q5TC82 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC17.93■□□□□ 0.46
RC3H1Q5TC82 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
RC3H1Q5TC82 RPF1-201ENST00000370654 1385 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 85 ms