Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC14.35□□□□□ -0.11
LIMK1P53667 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
LIMK1P53667 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC14.35□□□□□ -0.11
LIMK1P53667 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC14.35□□□□□ -0.11
LIMK1P53667 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC14.35□□□□□ -0.11
LIMK1P53667 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LIMK1P53667 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC14.35□□□□□ -0.11
LIMK1P53667 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
LIMK1P53667 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
LIMK1P53667 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC14.35□□□□□ -0.11
LIMK1P53667 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC14.35□□□□□ -0.11
LIMK1P53667 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
LIMK1P53667 CCR7-201ENST00000246657 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LIMK1P53667 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC14.35□□□□□ -0.11
LIMK1P53667 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
LIMK1P53667 SPATA8-201ENST00000328504 1083 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
LIMK1P53667 SLC50A1-202ENST00000368401 1166 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
LIMK1P53667 STK16-203ENST00000409516 895 ntTSL 2 BASIC14.35□□□□□ -0.11
LIMK1P53667 CTHRC1-202ENST00000415886 571 ntTSL 2 BASIC14.35□□□□□ -0.11
LIMK1P53667 KRT17P4-201ENST00000429445 819 ntBASIC14.35□□□□□ -0.11
LIMK1P53667 DARS-AS1-204ENST00000444406 442 ntTSL 2 BASIC14.35□□□□□ -0.11
LIMK1P53667 RPL35P9-201ENST00000446059 350 ntBASIC14.35□□□□□ -0.11
LIMK1P53667 FRMD4A-208ENST00000493380 1149 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
LIMK1P53667 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC14.35□□□□□ -0.11
LIMK1P53667 AC005041.3-201ENST00000606287 649 ntBASIC14.35□□□□□ -0.11
LIMK1P53667 MME-218ENST00000625667 363 ntTSL 5 BASIC14.35□□□□□ -0.11
LIMK1P53667 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
LIMK1P53667 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
LIMK1P53667 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
LIMK1P53667 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LIMK1P53667 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
LIMK1P53667 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LIMK1P53667 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
LIMK1P53667 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC14.35□□□□□ -0.11
LIMK1P53667 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
LIMK1P53667 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC14.35□□□□□ -0.11
LIMK1P53667 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
LIMK1P53667 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
LIMK1P53667 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
LIMK1P53667 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
LIMK1P53667 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
LIMK1P53667 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LIMK1P53667 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
LIMK1P53667 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC14.35□□□□□ -0.11
LIMK1P53667 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
LIMK1P53667 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIMK1P53667 CYP4F23P-201ENST00000593402 1579 ntBASIC14.34□□□□□ -0.11
LIMK1P53667 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC14.34□□□□□ -0.11
LIMK1P53667 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIMK1P53667 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIMK1P53667 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC14.34□□□□□ -0.11
LIMK1P53667 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIMK1P53667 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIMK1P53667 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC14.34□□□□□ -0.11
LIMK1P53667 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIMK1P53667 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
LIMK1P53667 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
LIMK1P53667 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
LIMK1P53667 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
LIMK1P53667 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
LIMK1P53667 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
LIMK1P53667 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIMK1P53667 ZEB1-AS1-208ENST00000607166 2503 ntBASIC14.34□□□□□ -0.11
LIMK1P53667 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC14.34□□□□□ -0.11
LIMK1P53667 AC140479.7-201ENST00000636301 2332 ntBASIC14.34□□□□□ -0.11
LIMK1P53667 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIMK1P53667 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIMK1P53667 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIMK1P53667 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIMK1P53667 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
LIMK1P53667 BGLAP-201ENST00000368272 732 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIMK1P53667 BCAS2-201ENST00000369541 1299 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIMK1P53667 TRBV4-1-201ENST00000390357 373 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
LIMK1P53667 TRBV4-2-201ENST00000390392 455 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
LIMK1P53667 HNRNPA1P58-201ENST00000403629 610 ntBASIC14.34□□□□□ -0.11
LIMK1P53667 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC14.34□□□□□ -0.11
LIMK1P53667 AC019118.2-201ENST00000425776 718 ntTSL 5 BASIC14.34□□□□□ -0.11
LIMK1P53667 AC004540.1-204ENST00000449537 727 ntTSL 2 BASIC14.34□□□□□ -0.11
LIMK1P53667 SIX3-AS1-202ENST00000456467 557 ntTSL 2 BASIC14.34□□□□□ -0.11
LIMK1P53667 RNF216P1-212ENST00000493407 659 ntTSL 3 BASIC14.34□□□□□ -0.11
LIMK1P53667 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC14.34□□□□□ -0.11
LIMK1P53667 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC14.34□□□□□ -0.11
LIMK1P53667 AC026191.1-204ENST00000517846 608 ntTSL 3 BASIC14.34□□□□□ -0.11
LIMK1P53667 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
LIMK1P53667 LINC01569-203ENST00000573268 694 ntTSL 3 BASIC14.34□□□□□ -0.11
LIMK1P53667 AP005212.2-201ENST00000584979 510 ntBASIC14.34□□□□□ -0.11
LIMK1P53667 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC14.34□□□□□ -0.11
LIMK1P53667 PEBP1P2-201ENST00000603980 558 ntBASIC14.34□□□□□ -0.11
LIMK1P53667 AC242426.4-201ENST00000606856 573 ntTSL 5 BASIC14.34□□□□□ -0.11
LIMK1P53667 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
LIMK1P53667 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC14.34□□□□□ -0.11
LIMK1P53667 AC011471.3-201ENST00000623576 402 ntBASIC14.34□□□□□ -0.11
LIMK1P53667 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIMK1P53667 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIMK1P53667 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
LIMK1P53667 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC14.34□□□□□ -0.11
LIMK1P53667 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIMK1P53667 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
LIMK1P53667 MRPL37P1-201ENST00000592451 1337 ntBASIC14.34□□□□□ -0.11
LIMK1P53667 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 75.4 ms