Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL8A1P27658 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL8A1P27658 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC12.73□□□□□ -0.37
COL8A1P27658 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL8A1P27658 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC12.73□□□□□ -0.37
COL8A1P27658 SERPINB6-206ENST00000380546 1375 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL8A1P27658 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL8A1P27658 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL8A1P27658 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
COL8A1P27658 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
COL8A1P27658 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC12.73□□□□□ -0.37
COL8A1P27658 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL8A1P27658 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
COL8A1P27658 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
COL8A1P27658 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC12.73□□□□□ -0.37
COL8A1P27658 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL8A1P27658 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL8A1P27658 CYB561D1-203ENST00000393709 620 ntAPPRIS ALT1 TSL 4 BASIC12.73□□□□□ -0.37
COL8A1P27658 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
COL8A1P27658 ATP5J-202ENST00000400087 826 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
COL8A1P27658 HLA-DPA2-205ENST00000433582 733 ntBASIC12.73□□□□□ -0.37
COL8A1P27658 AC092580.1-201ENST00000433998 658 ntBASIC12.73□□□□□ -0.37
COL8A1P27658 RNLS-203ENST00000437752 525 ntTSL 2 BASIC12.73□□□□□ -0.37
COL8A1P27658 APCDD1L-AS1-206ENST00000445984 566 ntTSL 3 BASIC12.73□□□□□ -0.37
COL8A1P27658 APCDD1L-AS1-208ENST00000448374 546 ntTSL 4 BASIC12.73□□□□□ -0.37
COL8A1P27658 AL135901.1-201ENST00000451812 333 ntBASIC12.73□□□□□ -0.37
COL8A1P27658 FAHD2CP-203ENST00000467292 965 ntTSL 2 BASIC12.73□□□□□ -0.37
COL8A1P27658 AC012213.1-201ENST00000517376 722 ntTSL 3 BASIC12.73□□□□□ -0.37
COL8A1P27658 AC108471.2-201ENST00000533736 1061 ntTSL 3 BASIC12.73□□□□□ -0.37
COL8A1P27658 AC090001.1-201ENST00000553194 467 ntTSL 3 BASIC12.73□□□□□ -0.37
COL8A1P27658 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
COL8A1P27658 SELENOW-202ENST00000593892 550 ntAPPRIS P1 TSL 3 BASIC12.73□□□□□ -0.37
COL8A1P27658 AC005759.1-202ENST00000599416 415 ntTSL 3 BASIC12.73□□□□□ -0.37
COL8A1P27658 NAMA-206ENST00000605377 509 ntTSL 5 BASIC12.73□□□□□ -0.37
COL8A1P27658 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC12.73□□□□□ -0.37
COL8A1P27658 AQP7-213ENST00000624075 1270 ntTSL 2 BASIC12.73□□□□□ -0.37
COL8A1P27658 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC12.73□□□□□ -0.37
COL8A1P27658 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL8A1P27658 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL8A1P27658 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
COL8A1P27658 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
COL8A1P27658 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC12.73□□□□□ -0.37
COL8A1P27658 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL8A1P27658 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL8A1P27658 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL8A1P27658 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC12.73□□□□□ -0.37
COL8A1P27658 SLC9A7P1-202ENST00000556476 2239 ntBASIC12.73□□□□□ -0.37
COL8A1P27658 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL8A1P27658 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC12.73□□□□□ -0.37
COL8A1P27658 AC144831.1-201ENST00000573312 2656 ntBASIC12.73□□□□□ -0.37
COL8A1P27658 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
COL8A1P27658 REXO1L2P-201ENST00000425429 2069 ntBASIC12.73□□□□□ -0.37
COL8A1P27658 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC12.72□□□□□ -0.37
COL8A1P27658 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC12.72□□□□□ -0.37
COL8A1P27658 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL8A1P27658 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
COL8A1P27658 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC12.72□□□□□ -0.37
COL8A1P27658 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL8A1P27658 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL8A1P27658 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
COL8A1P27658 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL8A1P27658 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
COL8A1P27658 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC12.72□□□□□ -0.37
COL8A1P27658 AC127383.1-201ENST00000444697 1800 ntBASIC12.72□□□□□ -0.37
COL8A1P27658 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL8A1P27658 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL8A1P27658 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
COL8A1P27658 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC12.72□□□□□ -0.37
COL8A1P27658 SLC50A1-203ENST00000368404 1300 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL8A1P27658 AL138725.1-201ENST00000407347 1314 ntBASIC12.72□□□□□ -0.37
COL8A1P27658 NIFK-AS1-203ENST00000419902 1316 ntTSL 2 BASIC12.72□□□□□ -0.37
COL8A1P27658 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
COL8A1P27658 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
COL8A1P27658 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
COL8A1P27658 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC12.72□□□□□ -0.37
COL8A1P27658 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
COL8A1P27658 KRT17P5-201ENST00000332088 839 ntBASIC12.72□□□□□ -0.37
COL8A1P27658 ODF3L1-201ENST00000332145 1196 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL8A1P27658 SNX15-201ENST00000352068 771 ntTSL 5 BASIC12.72□□□□□ -0.37
COL8A1P27658 XPNPEP2-201ENST00000371105 912 ntTSL 2 BASIC12.72□□□□□ -0.37
COL8A1P27658 MDS2-201ENST00000374555 1029 ntAPPRIS P5 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL8A1P27658 AL109935.1-201ENST00000413249 473 ntTSL 3 BASIC12.72□□□□□ -0.37
COL8A1P27658 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL8A1P27658 ACTG1P19-201ENST00000418987 1116 ntBASIC12.72□□□□□ -0.37
COL8A1P27658 XBP1P1-201ENST00000436573 652 ntBASIC12.72□□□□□ -0.37
COL8A1P27658 JAZF1-AS1-201ENST00000436758 548 ntTSL 2 BASIC12.72□□□□□ -0.37
COL8A1P27658 KCNK16-204ENST00000437525 981 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
COL8A1P27658 RPL35P9-201ENST00000446059 350 ntBASIC12.72□□□□□ -0.37
COL8A1P27658 AL355537.2-201ENST00000453367 375 ntTSL 2 BASIC12.72□□□□□ -0.37
COL8A1P27658 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
COL8A1P27658 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC12.72□□□□□ -0.37
COL8A1P27658 AL121796.1-201ENST00000505702 466 ntTSL 3 BASIC12.72□□□□□ -0.37
COL8A1P27658 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC12.72□□□□□ -0.37
COL8A1P27658 DUXAP9-201ENST00000547220 665 ntTSL 3 BASIC12.72□□□□□ -0.37
COL8A1P27658 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC12.72□□□□□ -0.37
COL8A1P27658 AC068867.1-201ENST00000559855 150 ntBASIC12.72□□□□□ -0.37
COL8A1P27658 TXNDC17-208ENST00000574838 746 ntTSL 3 BASIC12.72□□□□□ -0.37
COL8A1P27658 NAV1-210ENST00000593583 726 ntBASIC12.72□□□□□ -0.37
COL8A1P27658 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC12.72□□□□□ -0.37
COL8A1P27658 RPS5-204ENST00000598098 536 ntTSL 2 BASIC12.72□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms