Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
RAPGEF3O95398 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
RAPGEF3O95398 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC21.21■□□□□ 0.99
RAPGEF3O95398 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC21.21■□□□□ 0.99
RAPGEF3O95398 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
RAPGEF3O95398 AAAS-202ENST00000394384 1703 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
RAPGEF3O95398 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
RAPGEF3O95398 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC21.21■□□□□ 0.99
RAPGEF3O95398 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC21.21■□□□□ 0.99
RAPGEF3O95398 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC21.21■□□□□ 0.99
RAPGEF3O95398 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC21.21■□□□□ 0.99
RAPGEF3O95398 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
RAPGEF3O95398 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC21.21■□□□□ 0.99
RAPGEF3O95398 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
RAPGEF3O95398 CAMP-201ENST00000296435 745 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
RAPGEF3O95398 GYG2-201ENST00000353656 1293 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
RAPGEF3O95398 AL158207.2-201ENST00000414926 266 ntTSL 5 BASIC21.21■□□□□ 0.99
RAPGEF3O95398 KRT18P44-201ENST00000416086 1285 ntBASIC21.21■□□□□ 0.99
RAPGEF3O95398 Z82188.2-201ENST00000419128 630 ntTSL 5 BASIC21.21■□□□□ 0.99
RAPGEF3O95398 AL365500.1-201ENST00000442783 868 ntTSL 3 BASIC21.21■□□□□ 0.99
RAPGEF3O95398 AL162377.1-202ENST00000456688 1181 ntTSL 2 BASIC21.21■□□□□ 0.99
RAPGEF3O95398 RN7SL672P-201ENST00000474091 317 ntBASIC21.21■□□□□ 0.99
RAPGEF3O95398 AC099328.1-201ENST00000498809 1030 ntBASIC21.21■□□□□ 0.99
RAPGEF3O95398 RPSAP70-201ENST00000504462 864 ntBASIC21.21■□□□□ 0.99
RAPGEF3O95398 GLIPR1L2-203ENST00000547164 509 ntTSL 5 BASIC21.21■□□□□ 0.99
RAPGEF3O95398 MYL6-215ENST00000549566 685 ntTSL 2 BASIC21.21■□□□□ 0.99
RAPGEF3O95398 AC010478.1-203ENST00000558403 532 ntTSL 4 BASIC21.21■□□□□ 0.99
RAPGEF3O95398 SCAMP5-216ENST00000568081 710 ntTSL 2 BASIC21.21■□□□□ 0.99
RAPGEF3O95398 AC132825.4-202ENST00000578792 434 ntBASIC21.21■□□□□ 0.99
RAPGEF3O95398 RN7SL478P-201ENST00000584358 298 ntBASIC21.21■□□□□ 0.99
RAPGEF3O95398 IFNL3P1-201ENST00000595082 501 ntBASIC21.21■□□□□ 0.99
RAPGEF3O95398 Metazoa_SRP.156-201ENST00000622344 262 ntBASIC21.21■□□□□ 0.99
RAPGEF3O95398 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
RAPGEF3O95398 AK6-202ENST00000380822 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
RAPGEF3O95398 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
RAPGEF3O95398 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
RAPGEF3O95398 SALL4P6-201ENST00000429385 1691 ntBASIC21.21■□□□□ 0.99
RAPGEF3O95398 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
RAPGEF3O95398 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC21.21■□□□□ 0.99
RAPGEF3O95398 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC21.21■□□□□ 0.99
RAPGEF3O95398 AC232323.1-201ENST00000540724 2099 ntBASIC21.2■□□□□ 0.99
RAPGEF3O95398 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC21.2■□□□□ 0.99
RAPGEF3O95398 RPL13AP3-202ENST00000494676 1473 ntBASIC21.2■□□□□ 0.98
RAPGEF3O95398 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RAPGEF3O95398 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
RAPGEF3O95398 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RAPGEF3O95398 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RAPGEF3O95398 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
RAPGEF3O95398 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
RAPGEF3O95398 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RAPGEF3O95398 SEC61B-201ENST00000223641 545 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RAPGEF3O95398 FXYD2-202ENST00000292079 571 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
RAPGEF3O95398 DHRS7C-201ENST00000330255 1006 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
RAPGEF3O95398 BPIFA4P-201ENST00000375465 1203 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
RAPGEF3O95398 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
RAPGEF3O95398 SAA1-202ENST00000405158 675 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
RAPGEF3O95398 ACTBP14-201ENST00000411655 1089 ntBASIC21.2■□□□□ 0.98
RAPGEF3O95398 SEC61B-203ENST00000498603 587 ntTSL 3 BASIC21.2■□□□□ 0.98
RAPGEF3O95398 WWC2-208ENST00000508747 1216 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
RAPGEF3O95398 AP000640.1-201ENST00000525337 879 ntTSL 2 BASIC21.2■□□□□ 0.98
RAPGEF3O95398 ETV4-208ENST00000586826 917 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
RAPGEF3O95398 ZNF724-202ENST00000597037 780 ntTSL 2 BASIC21.2■□□□□ 0.98
RAPGEF3O95398 AL049840.2-201ENST00000602722 535 ntBASIC21.2■□□□□ 0.98
RAPGEF3O95398 AC104506.1-201ENST00000609247 429 ntBASIC21.2■□□□□ 0.98
RAPGEF3O95398 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RAPGEF3O95398 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RAPGEF3O95398 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC21.2■□□□□ 0.98
RAPGEF3O95398 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC21.2■□□□□ 0.98
RAPGEF3O95398 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC21.2■□□□□ 0.98
RAPGEF3O95398 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
RAPGEF3O95398 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC21.2■□□□□ 0.98
RAPGEF3O95398 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
RAPGEF3O95398 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
RAPGEF3O95398 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC21.2■□□□□ 0.98
RAPGEF3O95398 RIBC1-202ENST00000375327 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RAPGEF3O95398 UBL7-206ENST00000565335 1414 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RAPGEF3O95398 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RAPGEF3O95398 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
RAPGEF3O95398 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC21.2■□□□□ 0.98
RAPGEF3O95398 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
RAPGEF3O95398 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
RAPGEF3O95398 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC21.19■□□□□ 0.98
RAPGEF3O95398 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
RAPGEF3O95398 LHFPL1-201ENST00000371968 1675 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RAPGEF3O95398 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RAPGEF3O95398 AMT-256ENST00000638063 1783 ntTSL 5 BASIC21.19■□□□□ 0.98
RAPGEF3O95398 JPT2-203ENST00000382711 894 ntTSL 4 BASIC21.19■□□□□ 0.98
RAPGEF3O95398 CD79B-203ENST00000392795 1254 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
RAPGEF3O95398 IFITM1-202ENST00000408968 855 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RAPGEF3O95398 AL359092.2-201ENST00000423330 585 ntBASIC21.19■□□□□ 0.98
RAPGEF3O95398 AC011284.1-201ENST00000427920 856 ntTSL 4 BASIC21.19■□□□□ 0.98
RAPGEF3O95398 POLR2LP1-206ENST00000444785 187 ntBASIC21.19■□□□□ 0.98
RAPGEF3O95398 AL162231.1-205ENST00000544078 338 ntAPPRIS P2 TSL 2 BASIC21.19■□□□□ 0.98
RAPGEF3O95398 CSAG3-201ENST00000599845 844 ntAPPRIS P5 TSL 1 (best) BASIC21.19■□□□□ 0.98
RAPGEF3O95398 AC009041.4-201ENST00000620075 638 ntBASIC21.19■□□□□ 0.98
RAPGEF3O95398 AL499606.1-201ENST00000627866 413 ntTSL 3 BASIC21.19■□□□□ 0.98
RAPGEF3O95398 PAX6-237ENST00000638696 1203 ntTSL 5 BASIC21.19■□□□□ 0.98
RAPGEF3O95398 CSAG2-203ENST00000638741 844 ntAPPRIS P5 TSL 1 (best) BASIC21.19■□□□□ 0.98
RAPGEF3O95398 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC21.19■□□□□ 0.98
RAPGEF3O95398 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms