Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC18.39■□□□□ 0.54
NPHP1O15259 CHCHD7-202ENST00000355315 1535 ntTSL 2 BASIC18.39■□□□□ 0.54
NPHP1O15259 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC18.39■□□□□ 0.54
NPHP1O15259 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC18.39■□□□□ 0.53
NPHP1O15259 USP3-204ENST00000540797 5474 ntTSL 2 BASIC18.39■□□□□ 0.53
NPHP1O15259 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC18.39■□□□□ 0.53
NPHP1O15259 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC18.39■□□□□ 0.53
NPHP1O15259 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC18.39■□□□□ 0.53
NPHP1O15259 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
NPHP1O15259 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC18.39■□□□□ 0.53
NPHP1O15259 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
NPHP1O15259 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
NPHP1O15259 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC18.39■□□□□ 0.53
NPHP1O15259 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
NPHP1O15259 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
NPHP1O15259 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
NPHP1O15259 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
NPHP1O15259 RPL37A-203ENST00000427280 698 ntTSL 5 BASIC18.39■□□□□ 0.53
NPHP1O15259 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
NPHP1O15259 RPL13AP19-201ENST00000434320 584 ntBASIC18.39■□□□□ 0.53
NPHP1O15259 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC18.39■□□□□ 0.53
NPHP1O15259 XBP1P1-201ENST00000436573 652 ntBASIC18.39■□□□□ 0.53
NPHP1O15259 RPL37A-206ENST00000456586 401 ntTSL 5 BASIC18.39■□□□□ 0.53
NPHP1O15259 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC18.39■□□□□ 0.53
NPHP1O15259 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
NPHP1O15259 AC022858.1-201ENST00000521685 685 ntTSL 3 BASIC18.39■□□□□ 0.53
NPHP1O15259 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC18.39■□□□□ 0.53
NPHP1O15259 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC18.39■□□□□ 0.53
NPHP1O15259 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC18.39■□□□□ 0.53
NPHP1O15259 AC011462.2-201ENST00000598887 344 ntTSL 5 BASIC18.39■□□□□ 0.53
NPHP1O15259 RPL37A-211ENST00000598925 775 ntTSL 5 BASIC18.39■□□□□ 0.53
NPHP1O15259 SIGLEC18P-201ENST00000602271 909 ntBASIC18.39■□□□□ 0.53
NPHP1O15259 CR589904.1-202ENST00000611154 660 ntTSL 5 BASIC18.39■□□□□ 0.53
NPHP1O15259 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
NPHP1O15259 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC18.39■□□□□ 0.53
NPHP1O15259 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
NPHP1O15259 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
NPHP1O15259 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
NPHP1O15259 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC18.39■□□□□ 0.53
NPHP1O15259 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
NPHP1O15259 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
NPHP1O15259 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
NPHP1O15259 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
NPHP1O15259 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
NPHP1O15259 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.53
NPHP1O15259 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
NPHP1O15259 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
NPHP1O15259 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC18.38■□□□□ 0.53
NPHP1O15259 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC18.38■□□□□ 0.53
NPHP1O15259 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
NPHP1O15259 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NPHP1O15259 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
NPHP1O15259 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NPHP1O15259 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC18.38■□□□□ 0.53
NPHP1O15259 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
NPHP1O15259 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NPHP1O15259 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
NPHP1O15259 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
NPHP1O15259 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
NPHP1O15259 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NPHP1O15259 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC18.38■□□□□ 0.53
NPHP1O15259 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC18.38■□□□□ 0.53
NPHP1O15259 PLEKHA8P1-203ENST00000545609 277 ntTSL 3 BASIC18.38■□□□□ 0.53
NPHP1O15259 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
NPHP1O15259 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC18.38■□□□□ 0.53
NPHP1O15259 AQP8-202ENST00000566125 1276 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
NPHP1O15259 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC18.38■□□□□ 0.53
NPHP1O15259 HPN-206ENST00000597419 1212 ntTSL 5 BASIC18.38■□□□□ 0.53
NPHP1O15259 PRSS45-202ENST00000620911 1041 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
NPHP1O15259 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC18.38■□□□□ 0.53
NPHP1O15259 MVK-217ENST00000639206 367 ntTSL 5 BASIC18.38■□□□□ 0.53
NPHP1O15259 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NPHP1O15259 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
NPHP1O15259 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
NPHP1O15259 AHCYP4-201ENST00000419201 1315 ntBASIC18.38■□□□□ 0.53
NPHP1O15259 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NPHP1O15259 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
NPHP1O15259 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NPHP1O15259 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NPHP1O15259 NIN-202ENST00000324330 4364 ntTSL 5 BASIC18.38■□□□□ 0.53
NPHP1O15259 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NPHP1O15259 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NPHP1O15259 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NPHP1O15259 MAGI1-218ENST00000621418 6225 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NPHP1O15259 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NPHP1O15259 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NPHP1O15259 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
NPHP1O15259 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NPHP1O15259 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
NPHP1O15259 SPECC1L-ADORA2A-201ENST00000358654 6204 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
NPHP1O15259 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC18.37■□□□□ 0.53
NPHP1O15259 CMIP-202ENST00000537098 4357 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
NPHP1O15259 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NPHP1O15259 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NPHP1O15259 NRP2-201ENST00000272849 5909 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NPHP1O15259 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
NPHP1O15259 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NPHP1O15259 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
NPHP1O15259 C18orf15-201ENST00000623680 2534 ntBASIC18.37■□□□□ 0.53
NPHP1O15259 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 63.5 ms