Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
SLC28A1O00337 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.15
SLC28A1O00337 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC14.08□□□□□ -0.15
SLC28A1O00337 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
SLC28A1O00337 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC14.08□□□□□ -0.15
SLC28A1O00337 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
SLC28A1O00337 HARS-202ENST00000415192 1401 ntTSL 2 BASIC14.08□□□□□ -0.15
SLC28A1O00337 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
SLC28A1O00337 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SLC28A1O00337 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SLC28A1O00337 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC14.08□□□□□ -0.16
SLC28A1O00337 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
SLC28A1O00337 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SLC28A1O00337 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC14.08□□□□□ -0.16
SLC28A1O00337 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
SLC28A1O00337 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SLC28A1O00337 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
SLC28A1O00337 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
SLC28A1O00337 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SLC28A1O00337 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
SLC28A1O00337 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
SLC28A1O00337 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
SLC28A1O00337 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
SLC28A1O00337 AP006294.1-201ENST00000415407 339 ntBASIC14.08□□□□□ -0.16
SLC28A1O00337 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
SLC28A1O00337 AL035414.1-201ENST00000451327 857 ntBASIC14.08□□□□□ -0.16
SLC28A1O00337 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC14.08□□□□□ -0.16
SLC28A1O00337 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC14.08□□□□□ -0.16
SLC28A1O00337 AC106760.1-201ENST00000508690 800 ntBASIC14.08□□□□□ -0.16
SLC28A1O00337 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC14.08□□□□□ -0.16
SLC28A1O00337 RNA5SP486-201ENST00000515961 83 ntBASIC14.08□□□□□ -0.16
SLC28A1O00337 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC14.08□□□□□ -0.16
SLC28A1O00337 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
SLC28A1O00337 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
SLC28A1O00337 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC14.08□□□□□ -0.16
SLC28A1O00337 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
SLC28A1O00337 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC14.08□□□□□ -0.16
SLC28A1O00337 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC14.08□□□□□ -0.16
SLC28A1O00337 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC14.08□□□□□ -0.16
SLC28A1O00337 MIR4745-201ENST00000577608 62 ntBASIC14.08□□□□□ -0.16
SLC28A1O00337 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC14.08□□□□□ -0.16
SLC28A1O00337 RPSAP52-203ENST00000622976 1023 ntBASIC14.08□□□□□ -0.16
SLC28A1O00337 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC14.08□□□□□ -0.16
SLC28A1O00337 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SLC28A1O00337 AC015818.8-201ENST00000587907 1519 ntBASIC14.08□□□□□ -0.16
SLC28A1O00337 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
SLC28A1O00337 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
SLC28A1O00337 NUP153-203ENST00000613258 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
SLC28A1O00337 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
SLC28A1O00337 KBTBD7-201ENST00000379483 4734 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
SLC28A1O00337 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC14.08□□□□□ -0.16
SLC28A1O00337 AL355390.1-201ENST00000325811 2328 ntTSL 2 BASIC14.08□□□□□ -0.16
SLC28A1O00337 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
SLC28A1O00337 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
SLC28A1O00337 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
SLC28A1O00337 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SLC28A1O00337 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
SLC28A1O00337 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC14.08□□□□□ -0.16
SLC28A1O00337 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SLC28A1O00337 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SLC28A1O00337 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SLC28A1O00337 FAM198B-201ENST00000296530 4985 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SLC28A1O00337 GID4-201ENST00000268719 4237 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SLC28A1O00337 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
SLC28A1O00337 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SLC28A1O00337 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
SLC28A1O00337 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SLC28A1O00337 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
SLC28A1O00337 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC14.07□□□□□ -0.16
SLC28A1O00337 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC14.07□□□□□ -0.16
SLC28A1O00337 UACA-201ENST00000322954 6939 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
SLC28A1O00337 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC14.07□□□□□ -0.16
SLC28A1O00337 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SLC28A1O00337 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC14.07□□□□□ -0.16
SLC28A1O00337 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
SLC28A1O00337 DKFZP434A062-201ENST00000573103 5021 ntBASIC14.07□□□□□ -0.16
SLC28A1O00337 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
SLC28A1O00337 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
SLC28A1O00337 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
SLC28A1O00337 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SLC28A1O00337 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC14.07□□□□□ -0.16
SLC28A1O00337 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SLC28A1O00337 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SLC28A1O00337 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SLC28A1O00337 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SLC28A1O00337 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
SLC28A1O00337 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC14.07□□□□□ -0.16
SLC28A1O00337 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC14.07□□□□□ -0.16
SLC28A1O00337 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
SLC28A1O00337 RPL28-203ENST00000428193 573 ntTSL 2 BASIC14.07□□□□□ -0.16
SLC28A1O00337 RPL28-204ENST00000431533 590 ntTSL 2 BASIC14.07□□□□□ -0.16
SLC28A1O00337 PTPA-215ENST00000432124 567 ntTSL 4 BASIC14.07□□□□□ -0.16
SLC28A1O00337 C2orf27AP3-201ENST00000434123 579 ntBASIC14.07□□□□□ -0.16
SLC28A1O00337 FAM8A4P-201ENST00000435433 1213 ntBASIC14.07□□□□□ -0.16
SLC28A1O00337 AL161932.2-201ENST00000435436 679 ntBASIC14.07□□□□□ -0.16
SLC28A1O00337 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SLC28A1O00337 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
SLC28A1O00337 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC14.07□□□□□ -0.16
SLC28A1O00337 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC14.07□□□□□ -0.16
SLC28A1O00337 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC14.07□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 253.8 ms