Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC27.32■■□□□ 1.96
SHROOM4Q9ULL8 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
SHROOM4Q9ULL8 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC27.32■■□□□ 1.96
SHROOM4Q9ULL8 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
SHROOM4Q9ULL8 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC27.32■■□□□ 1.96
SHROOM4Q9ULL8 AC104640.1-201ENST00000562617 2109 ntBASIC27.32■■□□□ 1.96
SHROOM4Q9ULL8 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC27.32■■□□□ 1.96
SHROOM4Q9ULL8 AL354702.1-201ENST00000442006 1960 ntBASIC27.32■■□□□ 1.96
SHROOM4Q9ULL8 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC27.32■■□□□ 1.96
SHROOM4Q9ULL8 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
SHROOM4Q9ULL8 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
SHROOM4Q9ULL8 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC27.32■■□□□ 1.96
SHROOM4Q9ULL8 AP002353.1-201ENST00000528257 1599 ntBASIC27.32■■□□□ 1.96
SHROOM4Q9ULL8 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
SHROOM4Q9ULL8 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC27.32■■□□□ 1.96
SHROOM4Q9ULL8 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC27.32■■□□□ 1.96
SHROOM4Q9ULL8 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC27.32■■□□□ 1.96
SHROOM4Q9ULL8 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
SHROOM4Q9ULL8 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC27.32■■□□□ 1.96
SHROOM4Q9ULL8 HCG9-201ENST00000376800 663 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
SHROOM4Q9ULL8 KRT18P46-201ENST00000435568 1279 ntBASIC27.32■■□□□ 1.96
SHROOM4Q9ULL8 PAQR9-AS1-203ENST00000497652 516 ntTSL 3 BASIC27.32■■□□□ 1.96
SHROOM4Q9ULL8 CYB561A3-208ENST00000536915 1094 ntAPPRIS P1 TSL 2 BASIC27.32■■□□□ 1.96
SHROOM4Q9ULL8 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
SHROOM4Q9ULL8 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
SHROOM4Q9ULL8 CYP4F36P-201ENST00000589193 186 ntBASIC27.32■■□□□ 1.96
SHROOM4Q9ULL8 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC27.32■■□□□ 1.96
SHROOM4Q9ULL8 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC27.32■■□□□ 1.96
SHROOM4Q9ULL8 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
SHROOM4Q9ULL8 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
SHROOM4Q9ULL8 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC27.31■■□□□ 1.96
SHROOM4Q9ULL8 KIR2DS4-201ENST00000339924 1608 ntAPPRIS P5 TSL 1 (best) BASIC27.31■■□□□ 1.96
SHROOM4Q9ULL8 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC27.31■■□□□ 1.96
SHROOM4Q9ULL8 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
SHROOM4Q9ULL8 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC27.31■■□□□ 1.96
SHROOM4Q9ULL8 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC27.31■■□□□ 1.96
SHROOM4Q9ULL8 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
SHROOM4Q9ULL8 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC27.31■■□□□ 1.96
SHROOM4Q9ULL8 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
SHROOM4Q9ULL8 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
SHROOM4Q9ULL8 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC27.31■■□□□ 1.96
SHROOM4Q9ULL8 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC27.31■■□□□ 1.96
SHROOM4Q9ULL8 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
SHROOM4Q9ULL8 CTBP2P8-201ENST00000422584 1330 ntBASIC27.31■■□□□ 1.96
SHROOM4Q9ULL8 LAMA1-209ENST00000638611 1310 ntTSL 5 BASIC27.31■■□□□ 1.96
SHROOM4Q9ULL8 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
SHROOM4Q9ULL8 APOA1-203ENST00000375320 940 ntAPPRIS P1 TSL 3 BASIC27.31■■□□□ 1.96
SHROOM4Q9ULL8 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC27.31■■□□□ 1.96
SHROOM4Q9ULL8 ACYP2-204ENST00000422521 1115 ntTSL 5 BASIC27.31■■□□□ 1.96
SHROOM4Q9ULL8 CSNK1G2P1-201ENST00000442675 955 ntBASIC27.31■■□□□ 1.96
SHROOM4Q9ULL8 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC27.31■■□□□ 1.96
SHROOM4Q9ULL8 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC27.31■■□□□ 1.96
SHROOM4Q9ULL8 AC124068.2-201ENST00000569473 1109 ntBASIC27.31■■□□□ 1.96
SHROOM4Q9ULL8 AL137793.2-201ENST00000632635 659 ntTSL 3 BASIC27.31■■□□□ 1.96
SHROOM4Q9ULL8 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC27.31■■□□□ 1.96
SHROOM4Q9ULL8 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC27.31■■□□□ 1.96
SHROOM4Q9ULL8 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC27.31■■□□□ 1.96
SHROOM4Q9ULL8 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC27.31■■□□□ 1.96
SHROOM4Q9ULL8 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
SHROOM4Q9ULL8 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
SHROOM4Q9ULL8 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
SHROOM4Q9ULL8 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC27.3■■□□□ 1.96
SHROOM4Q9ULL8 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC27.3■■□□□ 1.96
SHROOM4Q9ULL8 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC27.3■■□□□ 1.96
SHROOM4Q9ULL8 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
SHROOM4Q9ULL8 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC27.3■■□□□ 1.96
SHROOM4Q9ULL8 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
SHROOM4Q9ULL8 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC27.3■■□□□ 1.96
SHROOM4Q9ULL8 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC27.3■■□□□ 1.96
SHROOM4Q9ULL8 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
SHROOM4Q9ULL8 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
SHROOM4Q9ULL8 OR2V1-201ENST00000329365 948 ntAPPRIS P1 BASIC27.3■■□□□ 1.96
SHROOM4Q9ULL8 MIR645-201ENST00000385283 94 ntBASIC27.3■■□□□ 1.96
SHROOM4Q9ULL8 OST4-201ENST00000429985 559 ntAPPRIS P1 TSL 2 BASIC27.3■■□□□ 1.96
SHROOM4Q9ULL8 ANAPC11-221ENST00000584314 559 ntTSL 2 BASIC27.3■■□□□ 1.96
SHROOM4Q9ULL8 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
SHROOM4Q9ULL8 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
SHROOM4Q9ULL8 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
SHROOM4Q9ULL8 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC27.3■■□□□ 1.96
SHROOM4Q9ULL8 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
SHROOM4Q9ULL8 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
SHROOM4Q9ULL8 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC27.29■■□□□ 1.96
SHROOM4Q9ULL8 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC27.29■■□□□ 1.96
SHROOM4Q9ULL8 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
SHROOM4Q9ULL8 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
SHROOM4Q9ULL8 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC27.29■■□□□ 1.96
SHROOM4Q9ULL8 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC27.29■■□□□ 1.96
SHROOM4Q9ULL8 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC27.29■■□□□ 1.96
SHROOM4Q9ULL8 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC27.29■■□□□ 1.96
SHROOM4Q9ULL8 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
SHROOM4Q9ULL8 OR2K2-201ENST00000302681 1078 ntAPPRIS P1 BASIC27.29■■□□□ 1.96
SHROOM4Q9ULL8 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC27.29■■□□□ 1.96
SHROOM4Q9ULL8 AC092580.1-201ENST00000433998 658 ntBASIC27.29■■□□□ 1.96
SHROOM4Q9ULL8 CISD2-202ENST00000503643 808 ntTSL 2 BASIC27.29■■□□□ 1.96
SHROOM4Q9ULL8 GDNF-207ENST00000515058 764 ntTSL 5 BASIC27.29■■□□□ 1.96
SHROOM4Q9ULL8 KRT8P1-201ENST00000557533 1207 ntBASIC27.29■■□□□ 1.96
SHROOM4Q9ULL8 POLR2E-204ENST00000586746 1096 ntAPPRIS P1 TSL 3 BASIC27.29■■□□□ 1.96
SHROOM4Q9ULL8 AC010632.2-201ENST00000588369 1224 ntBASIC27.29■■□□□ 1.96
SHROOM4Q9ULL8 SIGLEC22P-201ENST00000599104 714 ntBASIC27.29■■□□□ 1.96
SHROOM4Q9ULL8 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms