Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC18.56■□□□□ 0.56
CHMP4AQ9BY43 ISCA2P1-201ENST00000425548 448 ntBASIC18.56■□□□□ 0.56
CHMP4AQ9BY43 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC18.56■□□□□ 0.56
CHMP4AQ9BY43 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC18.56■□□□□ 0.56
CHMP4AQ9BY43 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
CHMP4AQ9BY43 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC18.56■□□□□ 0.56
CHMP4AQ9BY43 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHMP4AQ9BY43 AC104581.4-201ENST00000623126 3052 ntBASIC18.56■□□□□ 0.56
CHMP4AQ9BY43 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHMP4AQ9BY43 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHMP4AQ9BY43 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
CHMP4AQ9BY43 AC015802.1-201ENST00000588104 1449 ntBASIC18.56■□□□□ 0.56
CHMP4AQ9BY43 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
CHMP4AQ9BY43 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHMP4AQ9BY43 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CHMP4AQ9BY43 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC18.56■□□□□ 0.56
CHMP4AQ9BY43 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHMP4AQ9BY43 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHMP4AQ9BY43 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC18.55■□□□□ 0.56
CHMP4AQ9BY43 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHMP4AQ9BY43 AC008132.1-202ENST00000342005 1389 ntBASIC18.55■□□□□ 0.56
CHMP4AQ9BY43 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHMP4AQ9BY43 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHMP4AQ9BY43 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC18.55■□□□□ 0.56
CHMP4AQ9BY43 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHMP4AQ9BY43 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHMP4AQ9BY43 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHMP4AQ9BY43 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC18.55■□□□□ 0.56
CHMP4AQ9BY43 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC18.55■□□□□ 0.56
CHMP4AQ9BY43 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CHMP4AQ9BY43 CICP24-201ENST00000605464 2705 ntBASIC18.55■□□□□ 0.56
CHMP4AQ9BY43 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHMP4AQ9BY43 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC18.55■□□□□ 0.56
CHMP4AQ9BY43 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHMP4AQ9BY43 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHMP4AQ9BY43 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHMP4AQ9BY43 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC18.55■□□□□ 0.56
CHMP4AQ9BY43 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC18.55■□□□□ 0.56
CHMP4AQ9BY43 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHMP4AQ9BY43 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC18.55■□□□□ 0.56
CHMP4AQ9BY43 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CHMP4AQ9BY43 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC18.55■□□□□ 0.56
CHMP4AQ9BY43 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC18.55■□□□□ 0.56
CHMP4AQ9BY43 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHMP4AQ9BY43 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CHMP4AQ9BY43 RN7SL530P-201ENST00000485097 298 ntBASIC18.55■□□□□ 0.56
CHMP4AQ9BY43 AC245884.6-201ENST00000515672 1067 ntBASIC18.55■□□□□ 0.56
CHMP4AQ9BY43 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC18.55■□□□□ 0.56
CHMP4AQ9BY43 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC18.55■□□□□ 0.56
CHMP4AQ9BY43 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC18.55■□□□□ 0.56
CHMP4AQ9BY43 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CHMP4AQ9BY43 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CHMP4AQ9BY43 SKA2-205ENST00000580541 689 ntTSL 3 BASIC18.55■□□□□ 0.56
CHMP4AQ9BY43 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC18.55■□□□□ 0.56
CHMP4AQ9BY43 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHMP4AQ9BY43 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC18.55■□□□□ 0.56
CHMP4AQ9BY43 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC18.55■□□□□ 0.56
CHMP4AQ9BY43 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CHMP4AQ9BY43 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHMP4AQ9BY43 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC18.55■□□□□ 0.56
CHMP4AQ9BY43 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC18.55■□□□□ 0.56
CHMP4AQ9BY43 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHMP4AQ9BY43 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC18.55■□□□□ 0.56
CHMP4AQ9BY43 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC18.55■□□□□ 0.56
CHMP4AQ9BY43 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CHMP4AQ9BY43 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHMP4AQ9BY43 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
CHMP4AQ9BY43 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CHMP4AQ9BY43 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHMP4AQ9BY43 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHMP4AQ9BY43 WARS-203ENST00000358655 2466 ntTSL 2 BASIC18.55■□□□□ 0.56
CHMP4AQ9BY43 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CHMP4AQ9BY43 CCDC180-210ENST00000529487 5242 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CHMP4AQ9BY43 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CHMP4AQ9BY43 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC18.54■□□□□ 0.56
CHMP4AQ9BY43 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CHMP4AQ9BY43 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC18.54■□□□□ 0.56
CHMP4AQ9BY43 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
CHMP4AQ9BY43 ACKR3-201ENST00000272928 2203 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
CHMP4AQ9BY43 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC18.54■□□□□ 0.56
CHMP4AQ9BY43 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC18.54■□□□□ 0.56
CHMP4AQ9BY43 TNRC18P2-201ENST00000417666 2714 ntBASIC18.54■□□□□ 0.56
CHMP4AQ9BY43 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
CHMP4AQ9BY43 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
CHMP4AQ9BY43 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC18.54■□□□□ 0.56
CHMP4AQ9BY43 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CHMP4AQ9BY43 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
CHMP4AQ9BY43 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CHMP4AQ9BY43 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CHMP4AQ9BY43 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC18.54■□□□□ 0.56
CHMP4AQ9BY43 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC18.54■□□□□ 0.56
CHMP4AQ9BY43 IGHJ2P-201ENST00000454480 60 ntBASIC18.54■□□□□ 0.56
CHMP4AQ9BY43 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC18.54■□□□□ 0.56
CHMP4AQ9BY43 AC012618.1-201ENST00000461223 412 ntBASIC18.54■□□□□ 0.56
CHMP4AQ9BY43 PFN2-206ENST00000461930 606 ntTSL 4 BASIC18.54■□□□□ 0.56
CHMP4AQ9BY43 RN7SL769P-201ENST00000469386 295 ntBASIC18.54■□□□□ 0.56
CHMP4AQ9BY43 TPI1-206ENST00000488464 791 ntTSL 5 BASIC18.54■□□□□ 0.56
CHMP4AQ9BY43 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC18.54■□□□□ 0.56
CHMP4AQ9BY43 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC18.54■□□□□ 0.56
CHMP4AQ9BY43 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC18.54■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms