Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CHMP4CQ96CF2 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
CHMP4CQ96CF2 HSPA7-201ENST00000445535 1927 ntBASIC17.49■□□□□ 0.39
CHMP4CQ96CF2 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC17.48■□□□□ 0.39
CHMP4CQ96CF2 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CHMP4CQ96CF2 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CHMP4CQ96CF2 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC17.48■□□□□ 0.39
CHMP4CQ96CF2 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CHMP4CQ96CF2 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
CHMP4CQ96CF2 FHOD3-201ENST00000257209 4967 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
CHMP4CQ96CF2 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
CHMP4CQ96CF2 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CHMP4CQ96CF2 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
CHMP4CQ96CF2 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CHMP4CQ96CF2 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CHMP4CQ96CF2 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CHMP4CQ96CF2 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CHMP4CQ96CF2 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CHMP4CQ96CF2 RN7SKP230-201ENST00000365642 335 ntBASIC17.48■□□□□ 0.39
CHMP4CQ96CF2 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CHMP4CQ96CF2 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC17.48■□□□□ 0.39
CHMP4CQ96CF2 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC17.48■□□□□ 0.39
CHMP4CQ96CF2 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CHMP4CQ96CF2 AC131206.1-201ENST00000538078 1211 ntBASIC17.48■□□□□ 0.39
CHMP4CQ96CF2 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CHMP4CQ96CF2 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC17.48■□□□□ 0.39
CHMP4CQ96CF2 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC17.48■□□□□ 0.39
CHMP4CQ96CF2 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
CHMP4CQ96CF2 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CHMP4CQ96CF2 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC17.48■□□□□ 0.39
CHMP4CQ96CF2 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC17.48■□□□□ 0.39
CHMP4CQ96CF2 ZFYVE28-211ENST00000515312 3247 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
CHMP4CQ96CF2 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC17.48■□□□□ 0.39
CHMP4CQ96CF2 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC17.48■□□□□ 0.39
CHMP4CQ96CF2 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CHMP4CQ96CF2 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CHMP4CQ96CF2 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CHMP4CQ96CF2 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC17.48■□□□□ 0.39
CHMP4CQ96CF2 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
CHMP4CQ96CF2 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC17.47■□□□□ 0.39
CHMP4CQ96CF2 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC17.47■□□□□ 0.39
CHMP4CQ96CF2 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CHMP4CQ96CF2 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
CHMP4CQ96CF2 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC17.47■□□□□ 0.39
CHMP4CQ96CF2 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CHMP4CQ96CF2 USP31-203ENST00000567975 2142 ntTSL 2 BASIC17.47■□□□□ 0.39
CHMP4CQ96CF2 CACNA2D2-204ENST00000424201 5206 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
CHMP4CQ96CF2 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CHMP4CQ96CF2 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CHMP4CQ96CF2 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CHMP4CQ96CF2 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CHMP4CQ96CF2 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CHMP4CQ96CF2 KRTAP10-13P-201ENST00000412914 571 ntBASIC17.47■□□□□ 0.39
CHMP4CQ96CF2 AC004945.1-201ENST00000416738 983 ntBASIC17.47■□□□□ 0.39
CHMP4CQ96CF2 HNRNPA1P63-201ENST00000427917 963 ntBASIC17.47■□□□□ 0.39
CHMP4CQ96CF2 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
CHMP4CQ96CF2 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC17.47■□□□□ 0.39
CHMP4CQ96CF2 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC17.47■□□□□ 0.39
CHMP4CQ96CF2 AL136172.1-201ENST00000598590 1394 ntBASIC17.47■□□□□ 0.39
CHMP4CQ96CF2 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CHMP4CQ96CF2 USP4-203ENST00000415188 1454 ntTSL 3 BASIC17.47■□□□□ 0.39
CHMP4CQ96CF2 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CHMP4CQ96CF2 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
CHMP4CQ96CF2 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CHMP4CQ96CF2 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CHMP4CQ96CF2 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CHMP4CQ96CF2 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC17.47■□□□□ 0.39
CHMP4CQ96CF2 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CHMP4CQ96CF2 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
CHMP4CQ96CF2 AC107918.4-201ENST00000641966 3141 ntBASIC17.47■□□□□ 0.39
CHMP4CQ96CF2 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC17.47■□□□□ 0.39
CHMP4CQ96CF2 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CHMP4CQ96CF2 HARS-202ENST00000415192 1401 ntTSL 2 BASIC17.47■□□□□ 0.39
CHMP4CQ96CF2 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC17.47■□□□□ 0.39
CHMP4CQ96CF2 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CHMP4CQ96CF2 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
CHMP4CQ96CF2 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
CHMP4CQ96CF2 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CHMP4CQ96CF2 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CHMP4CQ96CF2 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CHMP4CQ96CF2 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CHMP4CQ96CF2 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC17.46■□□□□ 0.39
CHMP4CQ96CF2 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CHMP4CQ96CF2 PANX2-202ENST00000395842 3051 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
CHMP4CQ96CF2 RPS3-201ENST00000278572 907 ntTSL 3 BASIC17.46■□□□□ 0.39
CHMP4CQ96CF2 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC17.46■□□□□ 0.39
CHMP4CQ96CF2 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CHMP4CQ96CF2 MIR1247-201ENST00000408206 136 ntBASIC17.46■□□□□ 0.39
CHMP4CQ96CF2 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC17.46■□□□□ 0.39
CHMP4CQ96CF2 CHMP1AP1-201ENST00000445563 662 ntBASIC17.46■□□□□ 0.39
CHMP4CQ96CF2 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC17.46■□□□□ 0.39
CHMP4CQ96CF2 ALG3P1-201ENST00000508806 1114 ntBASIC17.46■□□□□ 0.39
CHMP4CQ96CF2 CD74-212ENST00000524315 584 ntTSL 5 BASIC17.46■□□□□ 0.39
CHMP4CQ96CF2 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC17.46■□□□□ 0.39
CHMP4CQ96CF2 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC17.46■□□□□ 0.39
CHMP4CQ96CF2 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC17.46■□□□□ 0.39
CHMP4CQ96CF2 AL451050.2-201ENST00000606967 682 ntBASIC17.46■□□□□ 0.39
CHMP4CQ96CF2 AL022328.3-201ENST00000607943 679 ntBASIC17.46■□□□□ 0.39
CHMP4CQ96CF2 AL358472.3-201ENST00000608147 415 ntBASIC17.46■□□□□ 0.39
CHMP4CQ96CF2 AL136301.1-201ENST00000615830 422 ntBASIC17.46■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms