Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 PRKN-211ENST00000615065 261 ntTSL 5 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 HNRNPUL1-204ENST00000392006 3555 ntAPPRIS P2 TSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 AC006480.2-201ENST00000609770 1337 ntBASIC4.57□□□□□ -1.68
SYNE1Q8NF91 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 AL158070.2-201ENST00000623713 1621 ntBASIC4.57□□□□□ -1.68
SYNE1Q8NF91 AMT-224ENST00000635808 1610 ntTSL 5 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 RASA4-203ENST00000461209 3244 ntTSL 2 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 AC008158.1-201ENST00000578759 3668 ntBASIC4.57□□□□□ -1.68
SYNE1Q8NF91 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 ACSF3-201ENST00000317447 3664 ntAPPRIS P1 TSL 2 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 TPM3P8-201ENST00000330554 643 ntBASIC4.57□□□□□ -1.68
SYNE1Q8NF91 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 PAX2-203ENST00000370296 4140 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 TISP43-201ENST00000409793 538 ntTSL 4 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 PAX2-205ENST00000428433 4126 ntTSL 5 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 CHMP1AP1-201ENST00000445563 662 ntBASIC4.57□□□□□ -1.68
SYNE1Q8NF91 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 ARTN-209ENST00000479128 471 ntTSL 3 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 NAT9-222ENST00000583476 583 ntTSL 3 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 AC068473.3-202ENST00000589723 4167 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 APBB2-211ENST00000506352 3316 ntAPPRIS ALT1 TSL 5 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 GRIP2-206ENST00000637182 3727 ntAPPRIS ALT2 TSL 5 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 PNPLA6-204ENST00000545201 4502 ntTSL 2 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 PIGO-203ENST00000378617 4066 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 MAGEA5-201ENST00000446757 942 ntBASIC4.57□□□□□ -1.68
SYNE1Q8NF91 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 AC244452.3-201ENST00000636814 210 ntBASIC4.57□□□□□ -1.68
SYNE1Q8NF91 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 AC104129.1-202ENST00000480694 4481 ntTSL 2 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 CLPX-201ENST00000300107 4695 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 AL354989.2-201ENST00000435838 1540 ntBASIC4.57□□□□□ -1.68
SYNE1Q8NF91 AC011840.2-201ENST00000563063 1520 ntBASIC4.57□□□□□ -1.68
SYNE1Q8NF91 ARHGEF10L-202ENST00000361221 4488 ntAPPRIS P3 TSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 LCK-206ENST00000373564 2137 ntTSL 5 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 PKP2-202ENST00000340811 4302 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 SLC22A20-202ENST00000525437 3196 ntTSL 5 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 AC111182.1-201ENST00000588701 3419 ntBASIC4.57□□□□□ -1.68
SYNE1Q8NF91 BCAM-211ENST00000611077 3430 ntTSL 5 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 LSM5-207ENST00000410044 687 ntTSL 3 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 AL627389.1-201ENST00000413508 1182 ntBASIC4.57□□□□□ -1.68
SYNE1Q8NF91 KRTAP19-9P-201ENST00000421795 191 ntBASIC4.57□□□□□ -1.68
SYNE1Q8NF91 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 CMC2-214ENST00000565925 640 ntTSL 5 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 TJP2-206ENST00000453658 4129 ntAPPRIS ALT2 TSL 2 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 PCDHA11-202ENST00000616325 3418 ntAPPRIS ALT2 BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SYNE1Q8NF91 AC244453.2-201ENST00000457996 3543 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms