Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 GRAP-202ENST00000395635 834 ntTSL 2 BASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 AP006294.1-201ENST00000415407 339 ntBASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 TMPRSS11CP-201ENST00000453277 683 ntBASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 RN7SL440P-201ENST00000577855 343 ntBASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 AC025048.3-201ENST00000590609 569 ntBASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 INO80C-210ENST00000590757 595 ntTSL 2 BASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 AC005702.4-201ENST00000618393 416 ntBASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 ABCC10-204ENST00000372530 5033 ntAPPRIS ALT2 TSL 2 BASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 CD99L2-208ENST00000613030 3742 ntAPPRIS ALT2 TSL 2 BASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 C19orf57-204ENST00000586783 2454 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 MAPK4-206ENST00000592595 4330 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 WDR17-205ENST00000508596 4294 ntAPPRIS ALT1 TSL 1 (best) BASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 MAPT-IT1-201ENST00000624111 3016 ntBASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 HADH-202ENST00000403312 1752 ntTSL 5 BASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 ITGB8-201ENST00000222573 8751 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 DGCR8-201ENST00000351989 4514 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 TP73-209ENST00000603362 1668 ntTSL 5 BASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 PGLYRP2-201ENST00000292609 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 SMARCA4-202ENST00000413806 5512 ntTSL 5 BASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 ANKH-201ENST00000284268 8203 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 WNT5A-202ENST00000474267 6042 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 PAM-201ENST00000304400 3156 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 TOX2-202ENST00000358131 2605 ntTSL 2 BASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 CLCN7-203ENST00000448525 4151 ntTSL 2 BASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 CPA5-205ENST00000466363 2099 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 ANKHD1-203ENST00000360839 8221 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 GMPPB-203ENST00000480687 6108 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
DEPDC4Q8N2C3 CASKIN2-202ENST00000433559 3950 ntTSL 2 BASIC13.74□□□□□ -0.21
DEPDC4Q8N2C3 RER1-207ENST00000488353 2469 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
DEPDC4Q8N2C3 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC13.74□□□□□ -0.21
DEPDC4Q8N2C3 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
DEPDC4Q8N2C3 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
DEPDC4Q8N2C3 TGFBR3-204ENST00000465892 2908 ntAPPRIS ALT1 TSL 1 (best) BASIC13.74□□□□□ -0.21
DEPDC4Q8N2C3 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
DEPDC4Q8N2C3 PPT1-213ENST00000641319 2388 ntBASIC13.74□□□□□ -0.21
DEPDC4Q8N2C3 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC13.74□□□□□ -0.21
DEPDC4Q8N2C3 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
DEPDC4Q8N2C3 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
DEPDC4Q8N2C3 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC13.74□□□□□ -0.21
DEPDC4Q8N2C3 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
DEPDC4Q8N2C3 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
DEPDC4Q8N2C3 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
DEPDC4Q8N2C3 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
DEPDC4Q8N2C3 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
DEPDC4Q8N2C3 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC13.74□□□□□ -0.21
DEPDC4Q8N2C3 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
DEPDC4Q8N2C3 PTPA-220ENST00000436883 532 ntTSL 4 BASIC13.74□□□□□ -0.21
DEPDC4Q8N2C3 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC13.74□□□□□ -0.21
DEPDC4Q8N2C3 VPS52-212ENST00000445902 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
DEPDC4Q8N2C3 LILRB5-203ENST00000449561 2137 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
DEPDC4Q8N2C3 GAPDHP21-201ENST00000450301 1010 ntBASIC13.74□□□□□ -0.21
DEPDC4Q8N2C3 IL20RB-AS1-201ENST00000462176 562 ntTSL 4 BASIC13.74□□□□□ -0.21
DEPDC4Q8N2C3 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC13.74□□□□□ -0.21
DEPDC4Q8N2C3 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC13.74□□□□□ -0.21
DEPDC4Q8N2C3 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC13.74□□□□□ -0.21
DEPDC4Q8N2C3 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC13.74□□□□□ -0.21
DEPDC4Q8N2C3 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC13.74□□□□□ -0.21
DEPDC4Q8N2C3 AL596325.1-201ENST00000563991 1082 ntBASIC13.74□□□□□ -0.21
DEPDC4Q8N2C3 RRP7BP-205ENST00000566851 833 ntBASIC13.74□□□□□ -0.21
DEPDC4Q8N2C3 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
DEPDC4Q8N2C3 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC13.74□□□□□ -0.21
DEPDC4Q8N2C3 SLC22A23-202ENST00000380302 2883 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
DEPDC4Q8N2C3 GDAP1L1-206ENST00000537864 2855 ntTSL 2 BASIC13.74□□□□□ -0.21
DEPDC4Q8N2C3 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
DEPDC4Q8N2C3 EHD1-202ENST00000359393 3618 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
DEPDC4Q8N2C3 PPP6R2-202ENST00000359139 4035 ntAPPRIS ALT2 TSL 2 BASIC13.74□□□□□ -0.21
DEPDC4Q8N2C3 IGHG3-202ENST00000641136 2751 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
DEPDC4Q8N2C3 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
DEPDC4Q8N2C3 SPAST-201ENST00000315285 5117 ntAPPRIS P4 TSL 1 (best) BASIC13.74□□□□□ -0.21
DEPDC4Q8N2C3 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
DEPDC4Q8N2C3 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
DEPDC4Q8N2C3 AL355390.1-201ENST00000325811 2328 ntTSL 2 BASIC13.74□□□□□ -0.21
DEPDC4Q8N2C3 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC13.74□□□□□ -0.21
DEPDC4Q8N2C3 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
DEPDC4Q8N2C3 LRRC20-201ENST00000355790 3414 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
DEPDC4Q8N2C3 BTRC-203ENST00000393441 6084 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
DEPDC4Q8N2C3 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC13.74□□□□□ -0.21
DEPDC4Q8N2C3 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
DEPDC4Q8N2C3 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
DEPDC4Q8N2C3 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC13.74□□□□□ -0.21
DEPDC4Q8N2C3 AC020910.6-201ENST00000623084 1459 ntBASIC13.74□□□□□ -0.21
DEPDC4Q8N2C3 MARK1-201ENST00000366917 2946 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
DEPDC4Q8N2C3 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
DEPDC4Q8N2C3 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC13.73□□□□□ -0.21
DEPDC4Q8N2C3 GNB1L-201ENST00000329517 6706 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms