Protein–RNA interactions for Protein: Q6PD62

CTR9, RNA polymerase-associated protein CTR9 homolog, humanhuman

Predictions only

Length 1,173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9Q6PD62 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC17.32■□□□□ 0.36
CTR9Q6PD62 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC17.32■□□□□ 0.36
CTR9Q6PD62 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC17.32■□□□□ 0.36
CTR9Q6PD62 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC17.32■□□□□ 0.36
CTR9Q6PD62 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC17.32■□□□□ 0.36
CTR9Q6PD62 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC17.32■□□□□ 0.36
CTR9Q6PD62 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
CTR9Q6PD62 AC027237.1-201ENST00000560942 655 ntBASIC17.32■□□□□ 0.36
CTR9Q6PD62 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
CTR9Q6PD62 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC17.32■□□□□ 0.36
CTR9Q6PD62 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC17.32■□□□□ 0.36
CTR9Q6PD62 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC17.32■□□□□ 0.36
CTR9Q6PD62 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
CTR9Q6PD62 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
CTR9Q6PD62 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC17.32■□□□□ 0.36
CTR9Q6PD62 AL606495.2-201ENST00000605867 535 ntBASIC17.32■□□□□ 0.36
CTR9Q6PD62 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
CTR9Q6PD62 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC17.32■□□□□ 0.36
CTR9Q6PD62 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
CTR9Q6PD62 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
CTR9Q6PD62 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CTR9Q6PD62 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC17.32■□□□□ 0.36
CTR9Q6PD62 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC17.32■□□□□ 0.36
CTR9Q6PD62 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CTR9Q6PD62 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC17.32■□□□□ 0.36
CTR9Q6PD62 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CTR9Q6PD62 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
CTR9Q6PD62 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
CTR9Q6PD62 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CTR9Q6PD62 TACR2-201ENST00000373306 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CTR9Q6PD62 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC17.32■□□□□ 0.36
CTR9Q6PD62 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CTR9Q6PD62 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC17.31■□□□□ 0.36
CTR9Q6PD62 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
CTR9Q6PD62 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
CTR9Q6PD62 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CTR9Q6PD62 LINC00887-202ENST00000414120 2880 ntTSL 3 BASIC17.31■□□□□ 0.36
CTR9Q6PD62 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CTR9Q6PD62 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC17.31■□□□□ 0.36
CTR9Q6PD62 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CTR9Q6PD62 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
CTR9Q6PD62 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
CTR9Q6PD62 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
CTR9Q6PD62 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
CTR9Q6PD62 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CTR9Q6PD62 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC17.31■□□□□ 0.36
CTR9Q6PD62 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CTR9Q6PD62 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CTR9Q6PD62 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CTR9Q6PD62 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CTR9Q6PD62 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC17.31■□□□□ 0.36
CTR9Q6PD62 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CTR9Q6PD62 AL596276.2-201ENST00000447525 331 ntBASIC17.31■□□□□ 0.36
CTR9Q6PD62 AC022447.6-201ENST00000515522 438 ntBASIC17.31■□□□□ 0.36
CTR9Q6PD62 AC024681.1-201ENST00000521917 487 ntBASIC17.31■□□□□ 0.36
CTR9Q6PD62 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CTR9Q6PD62 CCNC-217ENST00000523985 958 ntTSL 2 BASIC17.31■□□□□ 0.36
CTR9Q6PD62 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
CTR9Q6PD62 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
CTR9Q6PD62 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC17.31■□□□□ 0.36
CTR9Q6PD62 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CTR9Q6PD62 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
CTR9Q6PD62 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC17.31■□□□□ 0.36
CTR9Q6PD62 AC097724.1-201ENST00000609581 426 ntBASIC17.31■□□□□ 0.36
CTR9Q6PD62 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC17.31■□□□□ 0.36
CTR9Q6PD62 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC17.31■□□□□ 0.36
CTR9Q6PD62 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC17.31■□□□□ 0.36
CTR9Q6PD62 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
CTR9Q6PD62 AC106881.1-201ENST00000605849 3329 ntBASIC17.31■□□□□ 0.36
CTR9Q6PD62 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC17.31■□□□□ 0.36
CTR9Q6PD62 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CTR9Q6PD62 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
CTR9Q6PD62 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CTR9Q6PD62 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC17.31■□□□□ 0.36
CTR9Q6PD62 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CTR9Q6PD62 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
CTR9Q6PD62 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CTR9Q6PD62 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
CTR9Q6PD62 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CTR9Q6PD62 CARHSP1-220ENST00000619881 2849 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
CTR9Q6PD62 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CTR9Q6PD62 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CTR9Q6PD62 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
CTR9Q6PD62 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
CTR9Q6PD62 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CTR9Q6PD62 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC17.3■□□□□ 0.36
CTR9Q6PD62 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CTR9Q6PD62 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CTR9Q6PD62 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC17.3■□□□□ 0.36
CTR9Q6PD62 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC17.3■□□□□ 0.36
CTR9Q6PD62 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC17.3■□□□□ 0.36
CTR9Q6PD62 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
CTR9Q6PD62 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
CTR9Q6PD62 AL662890.1-201ENST00000396818 632 ntBASIC17.3■□□□□ 0.36
CTR9Q6PD62 OR2R1P-201ENST00000441404 914 ntBASIC17.3■□□□□ 0.36
CTR9Q6PD62 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC17.3■□□□□ 0.36
CTR9Q6PD62 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC17.3■□□□□ 0.36
CTR9Q6PD62 SORD2P-201ENST00000558556 1069 ntBASIC17.3■□□□□ 0.36
CTR9Q6PD62 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC17.3■□□□□ 0.36
CTR9Q6PD62 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 89 ms