Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC11.85□□□□□ -0.51
CX3CL1P78423 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC11.85□□□□□ -0.51
CX3CL1P78423 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
CX3CL1P78423 MPV17-205ENST00000402310 906 ntTSL 5 BASIC11.85□□□□□ -0.51
CX3CL1P78423 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC11.85□□□□□ -0.51
CX3CL1P78423 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
CX3CL1P78423 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC11.85□□□□□ -0.51
CX3CL1P78423 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC11.85□□□□□ -0.51
CX3CL1P78423 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC11.85□□□□□ -0.51
CX3CL1P78423 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
CX3CL1P78423 FAM197Y7-201ENST00000432892 766 ntBASIC11.85□□□□□ -0.51
CX3CL1P78423 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
CX3CL1P78423 RPL8-205ENST00000527914 551 ntTSL 3 BASIC11.85□□□□□ -0.51
CX3CL1P78423 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC11.85□□□□□ -0.51
CX3CL1P78423 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC11.85□□□□□ -0.51
CX3CL1P78423 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC11.85□□□□□ -0.51
CX3CL1P78423 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
CX3CL1P78423 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC11.85□□□□□ -0.51
CX3CL1P78423 AC106886.1-201ENST00000568660 600 ntBASIC11.85□□□□□ -0.51
CX3CL1P78423 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC11.85□□□□□ -0.51
CX3CL1P78423 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC11.85□□□□□ -0.51
CX3CL1P78423 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
CX3CL1P78423 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
CX3CL1P78423 AL035252.4-201ENST00000624174 288 ntBASIC11.85□□□□□ -0.51
CX3CL1P78423 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC11.85□□□□□ -0.51
CX3CL1P78423 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC11.85□□□□□ -0.51
CX3CL1P78423 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
CX3CL1P78423 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
CX3CL1P78423 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
CX3CL1P78423 CYP20A1-201ENST00000356079 1949 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
CX3CL1P78423 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC11.85□□□□□ -0.51
CX3CL1P78423 ACAP2-201ENST00000326793 7160 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
CX3CL1P78423 OFD1-204ENST00000398395 3307 ntAPPRIS ALT2 TSL 5 BASIC11.85□□□□□ -0.51
CX3CL1P78423 FAM13B-201ENST00000033079 5465 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
CX3CL1P78423 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC11.85□□□□□ -0.51
CX3CL1P78423 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC11.85□□□□□ -0.51
CX3CL1P78423 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC11.85□□□□□ -0.51
CX3CL1P78423 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
CX3CL1P78423 ZFYVE28-211ENST00000515312 3247 ntAPPRIS ALT2 TSL 2 BASIC11.85□□□□□ -0.51
CX3CL1P78423 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
CX3CL1P78423 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
CX3CL1P78423 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC11.85□□□□□ -0.51
CX3CL1P78423 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
CX3CL1P78423 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC11.85□□□□□ -0.51
CX3CL1P78423 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
CX3CL1P78423 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
CX3CL1P78423 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
CX3CL1P78423 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC11.85□□□□□ -0.51
CX3CL1P78423 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC11.85□□□□□ -0.51
CX3CL1P78423 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
CX3CL1P78423 KIAA1161-201ENST00000297625 6398 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
CX3CL1P78423 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
CX3CL1P78423 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
CX3CL1P78423 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
CX3CL1P78423 PRKCB-201ENST00000303531 7969 ntAPPRIS P4 TSL 1 (best) BASIC11.85□□□□□ -0.51
CX3CL1P78423 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC11.84□□□□□ -0.51
CX3CL1P78423 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC11.84□□□□□ -0.51
CX3CL1P78423 AC089987.1-201ENST00000551654 2209 ntBASIC11.84□□□□□ -0.51
CX3CL1P78423 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
CX3CL1P78423 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
CX3CL1P78423 SIPA1L3-201ENST00000222345 7987 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
CX3CL1P78423 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
CX3CL1P78423 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
CX3CL1P78423 COL4A1-201ENST00000375820 6532 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
CX3CL1P78423 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
CX3CL1P78423 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
CX3CL1P78423 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC11.84□□□□□ -0.51
CX3CL1P78423 AC027612.1-201ENST00000445234 2395 ntBASIC11.84□□□□□ -0.51
CX3CL1P78423 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC11.84□□□□□ -0.51
CX3CL1P78423 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC11.84□□□□□ -0.51
CX3CL1P78423 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
CX3CL1P78423 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC11.84□□□□□ -0.51
CX3CL1P78423 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
CX3CL1P78423 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC11.84□□□□□ -0.51
CX3CL1P78423 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
CX3CL1P78423 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
CX3CL1P78423 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
CX3CL1P78423 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
CX3CL1P78423 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
CX3CL1P78423 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC11.84□□□□□ -0.51
CX3CL1P78423 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
CX3CL1P78423 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
CX3CL1P78423 BOLA2P3-201ENST00000404566 256 ntBASIC11.84□□□□□ -0.51
CX3CL1P78423 CD8B2-202ENST00000417670 633 ntBASIC11.84□□□□□ -0.51
CX3CL1P78423 HIST1H2BPS3-201ENST00000419683 341 ntBASIC11.84□□□□□ -0.51
CX3CL1P78423 CNN2P8-201ENST00000421872 913 ntBASIC11.84□□□□□ -0.51
CX3CL1P78423 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
CX3CL1P78423 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
CX3CL1P78423 AL590640.2-201ENST00000457038 527 ntBASIC11.84□□□□□ -0.51
CX3CL1P78423 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC11.84□□□□□ -0.51
CX3CL1P78423 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC11.84□□□□□ -0.51
CX3CL1P78423 KRT90P-201ENST00000549264 1064 ntBASIC11.84□□□□□ -0.51
CX3CL1P78423 AC138696.2-201ENST00000607376 223 ntBASIC11.84□□□□□ -0.51
CX3CL1P78423 AL162274.1-201ENST00000617191 1098 ntBASIC11.84□□□□□ -0.51
CX3CL1P78423 AC138951.2-201ENST00000623455 1161 ntBASIC11.84□□□□□ -0.51
CX3CL1P78423 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
CX3CL1P78423 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
CX3CL1P78423 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
CX3CL1P78423 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
CX3CL1P78423 AC011840.2-201ENST00000563063 1520 ntBASIC11.84□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 66.4 ms