Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
RNF4P78317 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
RNF4P78317 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
RNF4P78317 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
RNF4P78317 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
RNF4P78317 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
RNF4P78317 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC13.54□□□□□ -0.24
RNF4P78317 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
RNF4P78317 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC13.54□□□□□ -0.24
RNF4P78317 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
RNF4P78317 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
RNF4P78317 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
RNF4P78317 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
RNF4P78317 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
RNF4P78317 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC13.54□□□□□ -0.24
RNF4P78317 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
RNF4P78317 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
RNF4P78317 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC13.54□□□□□ -0.24
RNF4P78317 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
RNF4P78317 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
RNF4P78317 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
RNF4P78317 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
RNF4P78317 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
RNF4P78317 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
RNF4P78317 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
RNF4P78317 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
RNF4P78317 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
RNF4P78317 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
RNF4P78317 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
RNF4P78317 EIF4HP1-201ENST00000453115 687 ntBASIC13.54□□□□□ -0.24
RNF4P78317 AC006122.1-201ENST00000493323 440 ntBASIC13.54□□□□□ -0.24
RNF4P78317 SCARNA21-201ENST00000517026 139 ntBASIC13.54□□□□□ -0.24
RNF4P78317 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC13.54□□□□□ -0.24
RNF4P78317 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC13.54□□□□□ -0.24
RNF4P78317 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC13.54□□□□□ -0.24
RNF4P78317 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
RNF4P78317 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC13.54□□□□□ -0.24
RNF4P78317 AC027237.1-201ENST00000560942 655 ntBASIC13.54□□□□□ -0.24
RNF4P78317 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC13.54□□□□□ -0.24
RNF4P78317 AC138649.2-201ENST00000615886 705 ntBASIC13.54□□□□□ -0.24
RNF4P78317 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
RNF4P78317 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
RNF4P78317 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
RNF4P78317 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
RNF4P78317 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
RNF4P78317 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC13.54□□□□□ -0.24
RNF4P78317 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
RNF4P78317 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC13.54□□□□□ -0.24
RNF4P78317 CDK11B-203ENST00000341832 2998 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
RNF4P78317 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
RNF4P78317 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
RNF4P78317 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC13.54□□□□□ -0.24
RNF4P78317 FAM90A7P-201ENST00000382628 1395 ntBASIC13.54□□□□□ -0.24
RNF4P78317 FAM90A23P-201ENST00000400136 1395 ntBASIC13.54□□□□□ -0.24
RNF4P78317 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC13.54□□□□□ -0.24
RNF4P78317 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
RNF4P78317 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC13.54□□□□□ -0.24
RNF4P78317 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
RNF4P78317 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
RNF4P78317 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC13.54□□□□□ -0.24
RNF4P78317 AC138028.6-201ENST00000616106 1482 ntBASIC13.54□□□□□ -0.24
RNF4P78317 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
RNF4P78317 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC13.54□□□□□ -0.24
RNF4P78317 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
RNF4P78317 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
RNF4P78317 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
RNF4P78317 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
RNF4P78317 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC13.54□□□□□ -0.24
RNF4P78317 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC13.53□□□□□ -0.24
RNF4P78317 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC13.53□□□□□ -0.24
RNF4P78317 SLC27A4-201ENST00000300456 3028 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
RNF4P78317 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC13.53□□□□□ -0.24
RNF4P78317 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
RNF4P78317 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
RNF4P78317 MORC4-202ENST00000355610 3834 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
RNF4P78317 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
RNF4P78317 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC13.53□□□□□ -0.24
RNF4P78317 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
RNF4P78317 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
RNF4P78317 AC215219.1-201ENST00000400706 1817 ntBASIC13.53□□□□□ -0.24
RNF4P78317 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
RNF4P78317 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
RNF4P78317 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC13.53□□□□□ -0.24
RNF4P78317 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC13.53□□□□□ -0.24
RNF4P78317 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC13.53□□□□□ -0.24
RNF4P78317 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC13.53□□□□□ -0.24
RNF4P78317 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
RNF4P78317 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
RNF4P78317 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
RNF4P78317 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
RNF4P78317 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
RNF4P78317 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
RNF4P78317 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
RNF4P78317 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
RNF4P78317 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
RNF4P78317 FES-203ENST00000394302 2133 ntTSL 5 BASIC13.53□□□□□ -0.24
RNF4P78317 GAS5-209ENST00000430245 723 ntTSL 3 BASIC13.53□□□□□ -0.24
RNF4P78317 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC13.53□□□□□ -0.24
RNF4P78317 AKR7A2P1-201ENST00000460134 915 ntBASIC13.53□□□□□ -0.24
RNF4P78317 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC13.53□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms