Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 ADAMTSL4-201ENST00000271643 4250 ntAPPRIS P3 TSL 5 BASIC12.94□□□□□ -0.34
SOX2P48431 AL365181.3-201ENST00000605886 3222 ntBASIC12.94□□□□□ -0.34
SOX2P48431 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
SOX2P48431 YTHDF3-209ENST00000617200 5076 ntTSL 5 BASIC12.94□□□□□ -0.34
SOX2P48431 PGLYRP2-201ENST00000292609 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
SOX2P48431 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
SOX2P48431 MRPL37P1-201ENST00000592451 1337 ntBASIC12.94□□□□□ -0.34
SOX2P48431 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
SOX2P48431 AP4B1-201ENST00000256658 2742 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
SOX2P48431 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC12.94□□□□□ -0.34
SOX2P48431 PVR-205ENST00000425690 3325 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
SOX2P48431 ZC3H18-201ENST00000301011 3729 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
SOX2P48431 CACNA1G-230ENST00000514717 6699 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
SOX2P48431 ZYG11A-201ENST00000371528 4469 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
SOX2P48431 PROKR1-201ENST00000303786 4273 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
SOX2P48431 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
SOX2P48431 PPP6R2-204ENST00000395744 3293 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
SOX2P48431 THTPA-201ENST00000288014 2860 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
SOX2P48431 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
SOX2P48431 GMEB2-203ENST00000370077 4223 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
SOX2P48431 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
SOX2P48431 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC12.94□□□□□ -0.34
SOX2P48431 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC12.94□□□□□ -0.34
SOX2P48431 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC12.94□□□□□ -0.34
SOX2P48431 LSM5-207ENST00000410044 687 ntTSL 3 BASIC12.94□□□□□ -0.34
SOX2P48431 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC12.94□□□□□ -0.34
SOX2P48431 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
SOX2P48431 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
SOX2P48431 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC12.94□□□□□ -0.34
SOX2P48431 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC12.94□□□□□ -0.34
SOX2P48431 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC12.94□□□□□ -0.34
SOX2P48431 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC12.94□□□□□ -0.34
SOX2P48431 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC12.94□□□□□ -0.34
SOX2P48431 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC12.94□□□□□ -0.34
SOX2P48431 PDK2-203ENST00000503176 3440 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
SOX2P48431 SMC6-201ENST00000351948 5173 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
SOX2P48431 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
SOX2P48431 DGCR9-201ENST00000609630 2415 ntBASIC12.94□□□□□ -0.34
SOX2P48431 PASK-204ENST00000405260 4942 ntAPPRIS P3 TSL 5 BASIC12.94□□□□□ -0.34
SOX2P48431 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
SOX2P48431 MAN2B1-203ENST00000456935 3184 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
SOX2P48431 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC12.94□□□□□ -0.34
SOX2P48431 AHI1-201ENST00000265602 4335 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
SOX2P48431 GAB1-202ENST00000262995 7981 ntAPPRIS P4 TSL 1 (best) BASIC12.94□□□□□ -0.34
SOX2P48431 HIPK3-202ENST00000379016 7345 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
SOX2P48431 PKP1-203ENST00000367324 5384 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
SOX2P48431 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC12.94□□□□□ -0.34
SOX2P48431 CENPBD1-201ENST00000314994 2744 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
SOX2P48431 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
SOX2P48431 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
SOX2P48431 SSTR5-AS1-204ENST00000569832 2864 ntTSL 2 BASIC12.94□□□□□ -0.34
SOX2P48431 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
SOX2P48431 IKZF1-204ENST00000349824 5757 ntTSL 5 BASIC12.94□□□□□ -0.34
SOX2P48431 TMEM245-201ENST00000374586 7980 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
SOX2P48431 CIPC-201ENST00000361786 4486 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
SOX2P48431 SGMS1-202ENST00000361781 3744 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
SOX2P48431 FAM200B-201ENST00000422728 2962 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
SOX2P48431 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
SOX2P48431 RNASEH2C-201ENST00000308418 2794 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
SOX2P48431 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC12.93□□□□□ -0.34
SOX2P48431 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
SOX2P48431 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
SOX2P48431 INTS4P2-202ENST00000614726 2019 ntBASIC12.93□□□□□ -0.34
SOX2P48431 KCNAB2-219ENST00000602612 2396 ntTSL 2 BASIC12.93□□□□□ -0.34
SOX2P48431 USP48-213ENST00000529637 3228 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
SOX2P48431 LDHAL6A-201ENST00000280706 2526 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
SOX2P48431 GRK3-201ENST00000324198 9103 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
SOX2P48431 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
SOX2P48431 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
SOX2P48431 ARAP1-202ENST00000359373 5767 ntAPPRIS ALT2 TSL 2 BASIC12.93□□□□□ -0.34
SOX2P48431 TRDMT1-203ENST00000377799 3527 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
SOX2P48431 AC239798.2-201ENST00000415338 3540 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
SOX2P48431 RPS15-201ENST00000233609 534 ntTSL 2 BASIC12.93□□□□□ -0.34
SOX2P48431 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
SOX2P48431 MPRIP-202ENST00000341712 3846 ntAPPRIS P3 TSL 5 BASIC12.93□□□□□ -0.34
SOX2P48431 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
SOX2P48431 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
SOX2P48431 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC12.93□□□□□ -0.34
SOX2P48431 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
SOX2P48431 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC12.93□□□□□ -0.34
SOX2P48431 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC12.93□□□□□ -0.34
SOX2P48431 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
SOX2P48431 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC12.93□□□□□ -0.34
SOX2P48431 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
SOX2P48431 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC12.93□□□□□ -0.34
SOX2P48431 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC12.93□□□□□ -0.34
SOX2P48431 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
SOX2P48431 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC12.93□□□□□ -0.34
SOX2P48431 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC12.93□□□□□ -0.34
SOX2P48431 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC12.93□□□□□ -0.34
SOX2P48431 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC12.93□□□□□ -0.34
SOX2P48431 DUX4L27-201ENST00000554796 1261 ntBASIC12.93□□□□□ -0.34
SOX2P48431 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC12.93□□□□□ -0.34
SOX2P48431 AC120045.2-201ENST00000567334 178 ntBASIC12.93□□□□□ -0.34
SOX2P48431 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC12.93□□□□□ -0.34
SOX2P48431 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC12.93□□□□□ -0.34
SOX2P48431 RPS15-205ENST00000586686 562 ntTSL 5 BASIC12.93□□□□□ -0.34
SOX2P48431 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
SOX2P48431 RPS15-208ENST00000591804 711 ntTSL 5 BASIC12.93□□□□□ -0.34
SOX2P48431 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 66 ms