Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HNF4AP41235 AC026954.1-201ENST00000429771 1293 ntBASIC14.24□□□□□ -0.13
HNF4AP41235 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
HNF4AP41235 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC14.24□□□□□ -0.13
HNF4AP41235 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC14.24□□□□□ -0.13
HNF4AP41235 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC14.24□□□□□ -0.13
HNF4AP41235 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC14.24□□□□□ -0.13
HNF4AP41235 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC14.24□□□□□ -0.13
HNF4AP41235 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HNF4AP41235 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC14.24□□□□□ -0.13
HNF4AP41235 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC14.24□□□□□ -0.13
HNF4AP41235 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC14.24□□□□□ -0.13
HNF4AP41235 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC14.24□□□□□ -0.13
HNF4AP41235 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC14.24□□□□□ -0.13
HNF4AP41235 RHOXF1P1-202ENST00000635473 501 ntBASIC14.24□□□□□ -0.13
HNF4AP41235 AC006453.4-201ENST00000636949 1252 ntBASIC14.24□□□□□ -0.13
HNF4AP41235 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HNF4AP41235 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
HNF4AP41235 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
HNF4AP41235 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HNF4AP41235 WARS-203ENST00000358655 2466 ntTSL 2 BASIC14.24□□□□□ -0.13
HNF4AP41235 AC010327.5-201ENST00000586923 3061 ntBASIC14.24□□□□□ -0.13
HNF4AP41235 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HNF4AP41235 AC215219.1-201ENST00000400706 1817 ntBASIC14.24□□□□□ -0.13
HNF4AP41235 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HNF4AP41235 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HNF4AP41235 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HNF4AP41235 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC14.24□□□□□ -0.13
HNF4AP41235 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HNF4AP41235 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC14.24□□□□□ -0.13
HNF4AP41235 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HNF4AP41235 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC14.23□□□□□ -0.13
HNF4AP41235 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
HNF4AP41235 AC136759.1-202ENST00000530858 2194 ntBASIC14.23□□□□□ -0.13
HNF4AP41235 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
HNF4AP41235 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HNF4AP41235 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HNF4AP41235 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HNF4AP41235 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HNF4AP41235 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC14.23□□□□□ -0.13
HNF4AP41235 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HNF4AP41235 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC14.23□□□□□ -0.13
HNF4AP41235 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HNF4AP41235 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HNF4AP41235 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC14.23□□□□□ -0.13
HNF4AP41235 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
HNF4AP41235 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HNF4AP41235 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HNF4AP41235 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC14.23□□□□□ -0.13
HNF4AP41235 GZMB-202ENST00000382540 816 ntTSL 5 BASIC14.23□□□□□ -0.13
HNF4AP41235 MIR658-201ENST00000385210 100 ntBASIC14.23□□□□□ -0.13
HNF4AP41235 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HNF4AP41235 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC14.23□□□□□ -0.13
HNF4AP41235 ARSEP1-201ENST00000420443 635 ntBASIC14.23□□□□□ -0.13
HNF4AP41235 WBP2-203ENST00000433525 928 ntTSL 2 BASIC14.23□□□□□ -0.13
HNF4AP41235 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC14.23□□□□□ -0.13
HNF4AP41235 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HNF4AP41235 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC14.23□□□□□ -0.13
HNF4AP41235 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC14.23□□□□□ -0.13
HNF4AP41235 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC14.23□□□□□ -0.13
HNF4AP41235 IGHV3-71-201ENST00000523324 359 ntBASIC14.23□□□□□ -0.13
HNF4AP41235 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC14.23□□□□□ -0.13
HNF4AP41235 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC14.23□□□□□ -0.13
HNF4AP41235 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC14.23□□□□□ -0.13
HNF4AP41235 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC14.23□□□□□ -0.13
HNF4AP41235 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC14.23□□□□□ -0.13
HNF4AP41235 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
HNF4AP41235 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
HNF4AP41235 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC14.23□□□□□ -0.13
HNF4AP41235 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HNF4AP41235 MVK-217ENST00000639206 367 ntTSL 5 BASIC14.23□□□□□ -0.13
HNF4AP41235 AC002472.3-201ENST00000640124 621 ntBASIC14.23□□□□□ -0.13
HNF4AP41235 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HNF4AP41235 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
HNF4AP41235 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HNF4AP41235 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HNF4AP41235 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HNF4AP41235 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
HNF4AP41235 SPG11-210ENST00000558319 6426 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
HNF4AP41235 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC14.23□□□□□ -0.13
HNF4AP41235 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC14.23□□□□□ -0.13
HNF4AP41235 ABR-228ENST00000574437 3196 ntTSL 5 BASIC14.23□□□□□ -0.13
HNF4AP41235 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
HNF4AP41235 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
HNF4AP41235 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
HNF4AP41235 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HNF4AP41235 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HNF4AP41235 ALCAM-201ENST00000306107 4701 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HNF4AP41235 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HNF4AP41235 ADK-205ENST00000539909 1866 ntTSL 2 BASIC14.23□□□□□ -0.13
HNF4AP41235 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC14.23□□□□□ -0.13
HNF4AP41235 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HNF4AP41235 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HNF4AP41235 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
HNF4AP41235 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC14.22□□□□□ -0.13
HNF4AP41235 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HNF4AP41235 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC14.22□□□□□ -0.13
HNF4AP41235 CTBP1-AS2-206ENST00000581398 5652 ntBASIC14.22□□□□□ -0.13
HNF4AP41235 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HNF4AP41235 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms