Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
USF1P22415 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
USF1P22415 GRK6P1-201ENST00000400595 1711 ntBASIC12.45□□□□□ -0.42
USF1P22415 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC12.45□□□□□ -0.42
USF1P22415 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
USF1P22415 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
USF1P22415 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC12.45□□□□□ -0.42
USF1P22415 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
USF1P22415 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
USF1P22415 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
USF1P22415 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
USF1P22415 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
USF1P22415 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
USF1P22415 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
USF1P22415 GRIP2-204ENST00000619221 7977 ntAPPRIS P5 TSL 5 BASIC12.45□□□□□ -0.42
USF1P22415 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC12.45□□□□□ -0.42
USF1P22415 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
USF1P22415 CICP11-201ENST00000434745 2827 ntBASIC12.45□□□□□ -0.42
USF1P22415 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
USF1P22415 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
USF1P22415 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
USF1P22415 AL137783.1-201ENST00000623494 1896 ntBASIC12.45□□□□□ -0.42
USF1P22415 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
USF1P22415 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
USF1P22415 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC12.45□□□□□ -0.42
USF1P22415 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
USF1P22415 AK6-201ENST00000380818 1183 ntTSL 2 BASIC12.45□□□□□ -0.42
USF1P22415 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC12.45□□□□□ -0.42
USF1P22415 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC12.45□□□□□ -0.42
USF1P22415 PUDPP3-201ENST00000445368 636 ntBASIC12.45□□□□□ -0.42
USF1P22415 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC12.45□□□□□ -0.42
USF1P22415 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC12.45□□□□□ -0.42
USF1P22415 AC125604.1-201ENST00000496255 707 ntBASIC12.45□□□□□ -0.42
USF1P22415 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC12.45□□□□□ -0.42
USF1P22415 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC12.45□□□□□ -0.42
USF1P22415 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC12.45□□□□□ -0.42
USF1P22415 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC12.45□□□□□ -0.42
USF1P22415 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC12.45□□□□□ -0.42
USF1P22415 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
USF1P22415 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC12.45□□□□□ -0.42
USF1P22415 AC009955.4-201ENST00000597192 544 ntBASIC12.45□□□□□ -0.42
USF1P22415 AC068587.8-201ENST00000641239 219 ntBASIC12.45□□□□□ -0.42
USF1P22415 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
USF1P22415 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC12.45□□□□□ -0.42
USF1P22415 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC12.45□□□□□ -0.42
USF1P22415 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
USF1P22415 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC12.45□□□□□ -0.42
USF1P22415 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
USF1P22415 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC12.45□□□□□ -0.42
USF1P22415 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
USF1P22415 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC12.45□□□□□ -0.42
USF1P22415 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
USF1P22415 AC012508.2-201ENST00000567613 1472 ntBASIC12.45□□□□□ -0.42
USF1P22415 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
USF1P22415 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC12.45□□□□□ -0.42
USF1P22415 RAP2B-201ENST00000323534 8351 ntAPPRIS P1 BASIC12.45□□□□□ -0.42
USF1P22415 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC12.45□□□□□ -0.42
USF1P22415 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC12.45□□□□□ -0.42
USF1P22415 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
USF1P22415 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
USF1P22415 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
USF1P22415 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
USF1P22415 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
USF1P22415 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC12.45□□□□□ -0.42
USF1P22415 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
USF1P22415 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC12.44□□□□□ -0.42
USF1P22415 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
USF1P22415 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
USF1P22415 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
USF1P22415 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC12.44□□□□□ -0.42
USF1P22415 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC12.44□□□□□ -0.42
USF1P22415 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
USF1P22415 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
USF1P22415 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC12.44□□□□□ -0.42
USF1P22415 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
USF1P22415 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
USF1P22415 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC12.44□□□□□ -0.42
USF1P22415 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
USF1P22415 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
USF1P22415 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
USF1P22415 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC12.44□□□□□ -0.42
USF1P22415 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
USF1P22415 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC12.44□□□□□ -0.42
USF1P22415 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC12.44□□□□□ -0.42
USF1P22415 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
USF1P22415 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC12.44□□□□□ -0.42
USF1P22415 FASN-206ENST00000634990 8407 ntAPPRIS ALT1 TSL 5 BASIC12.44□□□□□ -0.42
USF1P22415 DSE-201ENST00000331677 7237 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
USF1P22415 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC12.44□□□□□ -0.42
USF1P22415 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC12.44□□□□□ -0.42
USF1P22415 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
USF1P22415 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
USF1P22415 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC12.44□□□□□ -0.42
USF1P22415 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC12.44□□□□□ -0.42
USF1P22415 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
USF1P22415 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
USF1P22415 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
USF1P22415 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC12.44□□□□□ -0.42
USF1P22415 ACTG1P2-201ENST00000415776 1125 ntBASIC12.44□□□□□ -0.42
USF1P22415 ACTG1P11-201ENST00000425411 1125 ntBASIC12.44□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms