Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CACNA1FO60840 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CACNA1FO60840 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC17.94■□□□□ 0.46
CACNA1FO60840 GS1-124K5.4-201ENST00000445681 540 ntTSL 2 BASIC17.94■□□□□ 0.46
CACNA1FO60840 AC096649.1-201ENST00000449168 497 ntTSL 3 BASIC17.94■□□□□ 0.46
CACNA1FO60840 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CACNA1FO60840 AC095040.1-201ENST00000513286 675 ntBASIC17.94■□□□□ 0.46
CACNA1FO60840 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC17.94■□□□□ 0.46
CACNA1FO60840 KRT8P2-201ENST00000556193 944 ntBASIC17.94■□□□□ 0.46
CACNA1FO60840 AC242376.2-201ENST00000619355 883 ntBASIC17.94■□□□□ 0.46
CACNA1FO60840 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
CACNA1FO60840 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC17.94■□□□□ 0.46
CACNA1FO60840 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CACNA1FO60840 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CACNA1FO60840 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
CACNA1FO60840 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CACNA1FO60840 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CACNA1FO60840 SALL4P6-201ENST00000429385 1691 ntBASIC17.94■□□□□ 0.46
CACNA1FO60840 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CACNA1FO60840 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC17.93■□□□□ 0.46
CACNA1FO60840 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
CACNA1FO60840 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
CACNA1FO60840 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CACNA1FO60840 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC17.93■□□□□ 0.46
CACNA1FO60840 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC17.93■□□□□ 0.46
CACNA1FO60840 BAX-205ENST00000391871 687 ntTSL 5 BASIC17.93■□□□□ 0.46
CACNA1FO60840 STK24P1-201ENST00000455035 1291 ntBASIC17.93■□□□□ 0.46
CACNA1FO60840 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CACNA1FO60840 FOS-204ENST00000554617 796 ntTSL 2 BASIC17.93■□□□□ 0.46
CACNA1FO60840 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC17.93■□□□□ 0.46
CACNA1FO60840 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC17.93■□□□□ 0.46
CACNA1FO60840 GOLGA8IP-202ENST00000611635 2100 ntBASIC17.93■□□□□ 0.46
CACNA1FO60840 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CACNA1FO60840 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CACNA1FO60840 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CACNA1FO60840 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC17.93■□□□□ 0.46
CACNA1FO60840 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CACNA1FO60840 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CACNA1FO60840 LAIR1-201ENST00000348231 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CACNA1FO60840 CDCA7-203ENST00000410019 1488 ntTSL 2 BASIC17.93■□□□□ 0.46
CACNA1FO60840 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CACNA1FO60840 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC17.93■□□□□ 0.46
CACNA1FO60840 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CACNA1FO60840 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CACNA1FO60840 AP3M2-202ENST00000396926 3545 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CACNA1FO60840 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CACNA1FO60840 PLEKHG6-201ENST00000011684 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CACNA1FO60840 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC17.93■□□□□ 0.46
CACNA1FO60840 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CACNA1FO60840 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CACNA1FO60840 HLA-DMA-203ENST00000395305 777 ntBASIC17.93■□□□□ 0.46
CACNA1FO60840 AC092506.1-202ENST00000401022 528 ntBASIC17.93■□□□□ 0.46
CACNA1FO60840 FGFR3P1-201ENST00000449999 601 ntBASIC17.93■□□□□ 0.46
CACNA1FO60840 SNORD3B-1-201ENST00000577988 758 ntBASIC17.93■□□□□ 0.46
CACNA1FO60840 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC17.93■□□□□ 0.46
CACNA1FO60840 MST1P2-201ENST00000457982 2291 ntBASIC17.93■□□□□ 0.46
CACNA1FO60840 AL359881.3-201ENST00000602640 1721 ntBASIC17.93■□□□□ 0.46
CACNA1FO60840 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CACNA1FO60840 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
CACNA1FO60840 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CACNA1FO60840 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC17.92■□□□□ 0.46
CACNA1FO60840 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CACNA1FO60840 SERPINB9P1-202ENST00000545177 1375 ntTSL 3 BASIC17.92■□□□□ 0.46
CACNA1FO60840 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CACNA1FO60840 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
CACNA1FO60840 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
CACNA1FO60840 NOB1-201ENST00000268802 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CACNA1FO60840 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC17.92■□□□□ 0.46
CACNA1FO60840 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CACNA1FO60840 CALR3-201ENST00000269881 1292 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CACNA1FO60840 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CACNA1FO60840 ACYP2-204ENST00000422521 1115 ntTSL 5 BASIC17.92■□□□□ 0.46
CACNA1FO60840 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC17.92■□□□□ 0.46
CACNA1FO60840 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC17.92■□□□□ 0.46
CACNA1FO60840 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC17.92■□□□□ 0.46
CACNA1FO60840 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC17.92■□□□□ 0.46
CACNA1FO60840 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC17.92■□□□□ 0.46
CACNA1FO60840 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CACNA1FO60840 NCF4-202ENST00000397147 1641 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CACNA1FO60840 KCNIP1-210ENST00000636734 1613 ntTSL 5 BASIC17.92■□□□□ 0.46
CACNA1FO60840 TMEM87A-201ENST00000307216 1598 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CACNA1FO60840 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CACNA1FO60840 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CACNA1FO60840 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
CACNA1FO60840 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CACNA1FO60840 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
CACNA1FO60840 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC17.92■□□□□ 0.46
CACNA1FO60840 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CACNA1FO60840 GPNMB-203ENST00000409458 1673 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CACNA1FO60840 AC015909.5-201ENST00000624336 2266 ntBASIC17.92■□□□□ 0.46
CACNA1FO60840 CPA5-206ENST00000474905 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CACNA1FO60840 CACNA1A-211ENST00000592864 1623 ntTSL 3 BASIC17.92■□□□□ 0.46
CACNA1FO60840 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CACNA1FO60840 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC17.92■□□□□ 0.46
CACNA1FO60840 ANKRD26P3-201ENST00000454044 2748 ntBASIC17.91■□□□□ 0.46
CACNA1FO60840 CSAG1-203ENST00000370291 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CACNA1FO60840 AIF1L-205ENST00000372301 671 ntTSL 2 BASIC17.91■□□□□ 0.46
CACNA1FO60840 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CACNA1FO60840 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CACNA1FO60840 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC17.91■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms