Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC11.82□□□□□ -0.52
HMGB3O15347 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC11.82□□□□□ -0.52
HMGB3O15347 AC243562.1-201ENST00000560672 389 ntBASIC11.82□□□□□ -0.52
HMGB3O15347 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC11.82□□□□□ -0.52
HMGB3O15347 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC11.82□□□□□ -0.52
HMGB3O15347 TBCB-211ENST00000589996 724 ntTSL 3 BASIC11.82□□□□□ -0.52
HMGB3O15347 LARGE1-203ENST00000402320 3955 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
HMGB3O15347 AC015909.5-201ENST00000624336 2266 ntBASIC11.82□□□□□ -0.52
HMGB3O15347 SYDE1-201ENST00000342784 3264 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
HMGB3O15347 DEK-201ENST00000244776 1441 ntTSL 2 BASIC11.82□□□□□ -0.52
HMGB3O15347 TOLLIP-203ENST00000525159 3429 ntTSL 2 BASIC11.82□□□□□ -0.52
HMGB3O15347 AFAP1-203ENST00000382543 2590 ntAPPRIS ALT1 TSL 5 BASIC11.82□□□□□ -0.52
HMGB3O15347 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
HMGB3O15347 AC073548.1-201ENST00000624088 1882 ntBASIC11.82□□□□□ -0.52
HMGB3O15347 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HMGB3O15347 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
HMGB3O15347 TTC38-201ENST00000381031 2610 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HMGB3O15347 PRPF40A-202ENST00000410080 8048 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
HMGB3O15347 POLD1-214ENST00000613923 3542 ntTSL 5 BASIC11.82□□□□□ -0.52
HMGB3O15347 HNRNPDL-207ENST00000614627 3968 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
HMGB3O15347 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC11.82□□□□□ -0.52
HMGB3O15347 CYP20A1-201ENST00000356079 1949 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
HMGB3O15347 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC11.82□□□□□ -0.52
HMGB3O15347 AC008429.1-202ENST00000518818 2067 ntTSL 2 BASIC11.82□□□□□ -0.52
HMGB3O15347 LPO-201ENST00000262290 2979 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
HMGB3O15347 ACP7-201ENST00000331256 2966 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
HMGB3O15347 AFDN-206ENST00000392112 7459 ntTSL 5 BASIC11.82□□□□□ -0.52
HMGB3O15347 CALCOCO1-218ENST00000550804 2291 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
HMGB3O15347 CSNK1A1P1-201ENST00000430593 2147 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
HMGB3O15347 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
HMGB3O15347 IMPDH1P4-201ENST00000445028 1534 ntBASIC11.81□□□□□ -0.52
HMGB3O15347 MLPH-201ENST00000264605 3823 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
HMGB3O15347 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
HMGB3O15347 DCAF8L2-203ENST00000545306 2013 ntAPPRIS P1 BASIC11.81□□□□□ -0.52
HMGB3O15347 MPP2-221ENST00000625880 4668 ntTSL 5 BASIC11.81□□□□□ -0.52
HMGB3O15347 FIBCD1-202ENST00000372338 3253 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HMGB3O15347 ATAD5-201ENST00000321990 6869 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HMGB3O15347 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC11.81□□□□□ -0.52
HMGB3O15347 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC11.81□□□□□ -0.52
HMGB3O15347 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
HMGB3O15347 AC104109.2-201ENST00000602919 1418 ntBASIC11.81□□□□□ -0.52
HMGB3O15347 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HMGB3O15347 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HMGB3O15347 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC11.81□□□□□ -0.52
HMGB3O15347 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HMGB3O15347 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC11.81□□□□□ -0.52
HMGB3O15347 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HMGB3O15347 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HMGB3O15347 PTMS-202ENST00000389462 773 ntTSL 2 BASIC11.81□□□□□ -0.52
HMGB3O15347 RBM39-205ENST00000397370 612 ntTSL 2 BASIC11.81□□□□□ -0.52
HMGB3O15347 AL133267.1-201ENST00000398220 340 ntBASIC11.81□□□□□ -0.52
HMGB3O15347 AC074338.1-201ENST00000416825 156 ntBASIC11.81□□□□□ -0.52
HMGB3O15347 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC11.81□□□□□ -0.52
HMGB3O15347 SPDYE11-202ENST00000450699 704 ntBASIC11.81□□□□□ -0.52
HMGB3O15347 RN7SL589P-201ENST00000481268 310 ntBASIC11.81□□□□□ -0.52
HMGB3O15347 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC11.81□□□□□ -0.52
HMGB3O15347 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC11.81□□□□□ -0.52
HMGB3O15347 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HMGB3O15347 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC11.81□□□□□ -0.52
HMGB3O15347 SLC25A39P2-201ENST00000537614 270 ntBASIC11.81□□□□□ -0.52
HMGB3O15347 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC11.81□□□□□ -0.52
HMGB3O15347 RARRES2P9-201ENST00000565168 469 ntBASIC11.81□□□□□ -0.52
HMGB3O15347 SPDYE9P-201ENST00000570642 692 ntBASIC11.81□□□□□ -0.52
HMGB3O15347 NT5C-211ENST00000582170 653 ntTSL 3 BASIC11.81□□□□□ -0.52
HMGB3O15347 CALM3-211ENST00000598871 561 ntTSL 4 BASIC11.81□□□□□ -0.52
HMGB3O15347 SPDYE10P-202ENST00000612005 668 ntBASIC11.81□□□□□ -0.52
HMGB3O15347 SPDYE8P-202ENST00000612377 668 ntBASIC11.81□□□□□ -0.52
HMGB3O15347 AC091812.2-201ENST00000619081 385 ntBASIC11.81□□□□□ -0.52
HMGB3O15347 AC092865.6-201ENST00000642101 219 ntBASIC11.81□□□□□ -0.52
HMGB3O15347 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HMGB3O15347 CREBZF-204ENST00000527447 4037 ntAPPRIS P1 BASIC11.81□□□□□ -0.52
HMGB3O15347 MED15-204ENST00000406969 3210 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
HMGB3O15347 AP003555.1-202ENST00000511013 1755 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
HMGB3O15347 ORAI2-210ENST00000611770 10679 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
HMGB3O15347 RHBDD1-201ENST00000341329 4883 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HMGB3O15347 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
HMGB3O15347 SPOCK3-218ENST00000511531 2908 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
HMGB3O15347 ANKRD20A19P-202ENST00000442969 2796 ntTSL 2 BASIC11.81□□□□□ -0.52
HMGB3O15347 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
HMGB3O15347 ARHGAP45-203ENST00000543365 3750 ntAPPRIS ALT2 TSL 2 BASIC11.81□□□□□ -0.52
HMGB3O15347 NSD2-205ENST00000382892 7706 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HMGB3O15347 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC11.81□□□□□ -0.52
HMGB3O15347 ACO1-203ENST00000541043 3618 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
HMGB3O15347 CAMK4-201ENST00000282356 12240 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HMGB3O15347 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HMGB3O15347 TMEM132D-201ENST00000389441 5305 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
HMGB3O15347 MOG-221ENST00000376917 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
HMGB3O15347 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HMGB3O15347 PNPLA6-204ENST00000545201 4502 ntTSL 2 BASIC11.81□□□□□ -0.52
HMGB3O15347 BDH1-203ENST00000392379 3546 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
HMGB3O15347 ENG-202ENST00000373203 3048 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
HMGB3O15347 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HMGB3O15347 SNHG28-201ENST00000368102 2501 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
HMGB3O15347 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC11.81□□□□□ -0.52
HMGB3O15347 RFESD-201ENST00000311364 2722 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HMGB3O15347 PATL2-208ENST00000560780 1863 ntAPPRIS ALT2 TSL 2 BASIC11.8□□□□□ -0.52
HMGB3O15347 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
HMGB3O15347 ADAM17-204ENST00000618923 1881 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
HMGB3O15347 HTR2C-201ENST00000276198 4751 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HMGB3O15347 SLC22A2-202ENST00000366953 2597 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms