Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 AC036164.1-201ENST00000570544 333 ntBASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 LSM12-202ENST00000585388 942 ntTSL 3 BASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 TEX48-202ENST00000612244 662 ntTSL 3 BASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 MGC16275-201ENST00000499670 2501 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 ANGPTL2-202ENST00000373425 3707 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 MPP2-219ENST00000612133 4938 ntTSL 5 BASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 NDUFS7-202ENST00000313408 2818 ntTSL 2 BASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 ZNF654-204ENST00000636215 6446 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 PLD2-201ENST00000263088 3503 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 FNIP1-205ENST00000615660 6589 ntTSL 5 BASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 GNAS-215ENST00000371102 3438 ntTSL 5 BASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 EHMT2-204ENST00000395728 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 TRPV1-206ENST00000571088 4105 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 ZNF501-205ENST00000620116 3382 ntAPPRIS P1 TSL 4 BASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 POLN-210ENST00000511885 3253 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
CHMP1AQ9HD42 MKL1-203ENST00000402042 4343 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
CHMP1AQ9HD42 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC12.71□□□□□ -0.37
CHMP1AQ9HD42 LILRB5-203ENST00000449561 2137 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
CHMP1AQ9HD42 CENPP-203ENST00000375587 8766 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CHMP1AQ9HD42 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CHMP1AQ9HD42 NR3C2-203ENST00000358102 5893 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CHMP1AQ9HD42 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CHMP1AQ9HD42 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC12.71□□□□□ -0.37
CHMP1AQ9HD42 GRIN1-204ENST00000371553 3751 ntAPPRIS P4 TSL 1 (best) BASIC12.71□□□□□ -0.37
CHMP1AQ9HD42 GRID2-201ENST00000282020 6117 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CHMP1AQ9HD42 IFITM10-201ENST00000340134 3706 ntAPPRIS P1 TSL 3 BASIC12.71□□□□□ -0.37
CHMP1AQ9HD42 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC12.71□□□□□ -0.37
CHMP1AQ9HD42 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC12.71□□□□□ -0.37
CHMP1AQ9HD42 KCNA1-201ENST00000382545 7997 ntAPPRIS P1 TSL 4 BASIC12.71□□□□□ -0.37
CHMP1AQ9HD42 GPER1-203ENST00000397092 2971 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.37
CHMP1AQ9HD42 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
CHMP1AQ9HD42 AL158070.2-201ENST00000623713 1621 ntBASIC12.71□□□□□ -0.37
CHMP1AQ9HD42 DGCR8-201ENST00000351989 4514 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CHMP1AQ9HD42 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
CHMP1AQ9HD42 AL139400.1-201ENST00000366220 510 ntBASIC12.71□□□□□ -0.37
CHMP1AQ9HD42 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
CHMP1AQ9HD42 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC12.71□□□□□ -0.37
CHMP1AQ9HD42 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
CHMP1AQ9HD42 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC12.71□□□□□ -0.37
CHMP1AQ9HD42 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
CHMP1AQ9HD42 KRT18P13-201ENST00000400056 1290 ntBASIC12.71□□□□□ -0.37
CHMP1AQ9HD42 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC12.71□□□□□ -0.37
CHMP1AQ9HD42 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC12.71□□□□□ -0.37
CHMP1AQ9HD42 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC12.71□□□□□ -0.37
CHMP1AQ9HD42 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
CHMP1AQ9HD42 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC12.71□□□□□ -0.37
CHMP1AQ9HD42 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CHMP1AQ9HD42 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
CHMP1AQ9HD42 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC12.71□□□□□ -0.37
CHMP1AQ9HD42 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC12.71□□□□□ -0.37
CHMP1AQ9HD42 AL158211.3-201ENST00000607385 239 ntBASIC12.71□□□□□ -0.37
CHMP1AQ9HD42 AL844908.2-201ENST00000609461 460 ntBASIC12.71□□□□□ -0.37
CHMP1AQ9HD42 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC12.71□□□□□ -0.37
CHMP1AQ9HD42 OPRL1-203ENST00000355631 3147 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CHMP1AQ9HD42 GSE1-203ENST00000405402 4366 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
CHMP1AQ9HD42 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC12.71□□□□□ -0.37
CHMP1AQ9HD42 LRRC20-201ENST00000355790 3414 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CHMP1AQ9HD42 DOT1L-201ENST00000398665 7436 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CHMP1AQ9HD42 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
CHMP1AQ9HD42 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
CHMP1AQ9HD42 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC12.71□□□□□ -0.38
CHMP1AQ9HD42 CXCR5-201ENST00000292174 4431 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
CHMP1AQ9HD42 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
CHMP1AQ9HD42 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC12.71□□□□□ -0.38
CHMP1AQ9HD42 B3GNT4-202ENST00000535274 2938 ntAPPRIS P1 BASIC12.71□□□□□ -0.38
CHMP1AQ9HD42 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC12.71□□□□□ -0.38
CHMP1AQ9HD42 COL2A1-201ENST00000337299 4257 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.38
CHMP1AQ9HD42 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC12.71□□□□□ -0.38
CHMP1AQ9HD42 PSME3-203ENST00000541124 3366 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 SENP3-202ENST00000429205 2222 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 CALML3-201ENST00000315238 2763 ntAPPRIS P1 BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 CAP2-209ENST00000616440 2776 ntTSL 2 BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 CYB561-202ENST00000392975 3007 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 EEF2K-201ENST00000263026 7388 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 ARHGAP10-201ENST00000336498 3299 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 C8orf31-201ENST00000395172 1875 ntTSL 2 BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 LOXL4-201ENST00000260702 3653 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 SLC22A23-202ENST00000380302 2883 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 MYD88-201ENST00000396334 2850 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CHMP1AQ9HD42 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC12.7□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms