Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC14.28□□□□□ -0.12
CCDC28BQ9BUN5 AP006288.1-201ENST00000446065 395 ntBASIC14.28□□□□□ -0.12
CCDC28BQ9BUN5 SYT1-204ENST00000457153 4592 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC28BQ9BUN5 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC14.28□□□□□ -0.12
CCDC28BQ9BUN5 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC14.28□□□□□ -0.12
CCDC28BQ9BUN5 AC097493.3-201ENST00000509725 367 ntBASIC14.28□□□□□ -0.12
CCDC28BQ9BUN5 SPDYE18-201ENST00000510091 1050 ntBASIC14.28□□□□□ -0.12
CCDC28BQ9BUN5 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC14.28□□□□□ -0.12
CCDC28BQ9BUN5 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC14.28□□□□□ -0.12
CCDC28BQ9BUN5 ABCC6P1-201ENST00000546162 2943 ntTSL 2 BASIC14.28□□□□□ -0.12
CCDC28BQ9BUN5 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
CCDC28BQ9BUN5 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC28BQ9BUN5 COASY-211ENST00000590958 1976 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC28BQ9BUN5 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
CCDC28BQ9BUN5 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
CCDC28BQ9BUN5 AP001972.5-201ENST00000624624 2338 ntBASIC14.28□□□□□ -0.12
CCDC28BQ9BUN5 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC14.28□□□□□ -0.12
CCDC28BQ9BUN5 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC28BQ9BUN5 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC28BQ9BUN5 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC28BQ9BUN5 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC28BQ9BUN5 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC28BQ9BUN5 MKRN1-201ENST00000255977 3151 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC28BQ9BUN5 SLC22A20-202ENST00000525437 3196 ntTSL 5 BASIC14.28□□□□□ -0.12
CCDC28BQ9BUN5 LRSAM1-203ENST00000373322 2849 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC28BQ9BUN5 EXOC3-201ENST00000315013 2682 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
CCDC28BQ9BUN5 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
CCDC28BQ9BUN5 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CCDC28BQ9BUN5 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CCDC28BQ9BUN5 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CCDC28BQ9BUN5 ARMCX3-203ENST00000471229 2051 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CCDC28BQ9BUN5 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CCDC28BQ9BUN5 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.12
CCDC28BQ9BUN5 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC14.27□□□□□ -0.12
CCDC28BQ9BUN5 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CCDC28BQ9BUN5 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
CCDC28BQ9BUN5 LHX6-210ENST00000559895 3587 ntTSL 2 BASIC14.27□□□□□ -0.12
CCDC28BQ9BUN5 PPM1M-203ENST00000409502 1790 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CCDC28BQ9BUN5 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CCDC28BQ9BUN5 SIGLEC6-201ENST00000343300 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
CCDC28BQ9BUN5 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
CCDC28BQ9BUN5 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
CCDC28BQ9BUN5 MMAB-210ENST00000545712 4438 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CCDC28BQ9BUN5 SELENON-202ENST00000361547 4334 ntAPPRIS P4 TSL 1 (best) BASIC14.27□□□□□ -0.12
CCDC28BQ9BUN5 RFESD-201ENST00000311364 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CCDC28BQ9BUN5 HSD17B4-201ENST00000256216 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
CCDC28BQ9BUN5 ADD2-202ENST00000355733 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
CCDC28BQ9BUN5 TFEB-205ENST00000394283 2595 ntTSL 2 BASIC14.27□□□□□ -0.13
CCDC28BQ9BUN5 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC28BQ9BUN5 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC28BQ9BUN5 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC28BQ9BUN5 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC28BQ9BUN5 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC28BQ9BUN5 KLF2P2-201ENST00000416807 1039 ntBASIC14.27□□□□□ -0.13
CCDC28BQ9BUN5 TSSK5P-201ENST00000423978 907 ntBASIC14.27□□□□□ -0.13
CCDC28BQ9BUN5 RASL12-203ENST00000434605 982 ntTSL 2 BASIC14.27□□□□□ -0.13
CCDC28BQ9BUN5 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.13
CCDC28BQ9BUN5 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC14.27□□□□□ -0.13
CCDC28BQ9BUN5 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC14.27□□□□□ -0.13
CCDC28BQ9BUN5 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC14.27□□□□□ -0.13
CCDC28BQ9BUN5 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC14.27□□□□□ -0.13
CCDC28BQ9BUN5 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC14.27□□□□□ -0.13
CCDC28BQ9BUN5 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC14.27□□□□□ -0.13
CCDC28BQ9BUN5 AC009407.1-201ENST00000568958 598 ntBASIC14.27□□□□□ -0.13
CCDC28BQ9BUN5 PRR29-204ENST00000577953 565 ntTSL 4 BASIC14.27□□□□□ -0.13
CCDC28BQ9BUN5 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC14.27□□□□□ -0.13
CCDC28BQ9BUN5 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC14.27□□□□□ -0.13
CCDC28BQ9BUN5 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC14.27□□□□□ -0.13
CCDC28BQ9BUN5 AL031728.1-201ENST00000449034 2479 ntTSL 3 BASIC14.27□□□□□ -0.13
CCDC28BQ9BUN5 ZFP36L2-201ENST00000282388 3696 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC28BQ9BUN5 LINC00940-201ENST00000418006 2350 ntTSL 2 BASIC14.27□□□□□ -0.13
CCDC28BQ9BUN5 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC28BQ9BUN5 SENP3-202ENST00000429205 2222 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
CCDC28BQ9BUN5 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
CCDC28BQ9BUN5 AP001062.1-201ENST00000448927 4354 ntTSL 2 BASIC14.27□□□□□ -0.13
CCDC28BQ9BUN5 ZBP1-201ENST00000371173 2195 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC28BQ9BUN5 IL21R-204ENST00000564089 3009 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
CCDC28BQ9BUN5 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC14.27□□□□□ -0.13
CCDC28BQ9BUN5 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC14.27□□□□□ -0.13
CCDC28BQ9BUN5 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC28BQ9BUN5 AC005324.3-201ENST00000455584 5514 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
CCDC28BQ9BUN5 ARHGEF10-207ENST00000520359 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC28BQ9BUN5 HECTD3-202ENST00000372172 3610 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
CCDC28BQ9BUN5 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC28BQ9BUN5 ELK1-201ENST00000247161 2695 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC28BQ9BUN5 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC14.27□□□□□ -0.13
CCDC28BQ9BUN5 ZNF274-210ENST00000610905 2559 ntAPPRIS P4 TSL 5 BASIC14.27□□□□□ -0.13
CCDC28BQ9BUN5 EPHB3-201ENST00000330394 4236 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC28BQ9BUN5 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC28BQ9BUN5 SLC26A6-213ENST00000455886 2460 ntTSL 2 BASIC14.26□□□□□ -0.13
CCDC28BQ9BUN5 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
CCDC28BQ9BUN5 ZNF785-201ENST00000395216 3282 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC28BQ9BUN5 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC28BQ9BUN5 PCDHA2-202ENST00000520672 3056 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC28BQ9BUN5 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
CCDC28BQ9BUN5 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC14.26□□□□□ -0.13
CCDC28BQ9BUN5 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
CCDC28BQ9BUN5 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
CCDC28BQ9BUN5 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC28BQ9BUN5 GNAS-215ENST00000371102 3438 ntTSL 5 BASIC14.26□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms