Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 AL356417.1-201ENST00000421161 845 ntTSL 3 BASIC17.14■□□□□ 0.33
SMC1BQ8NDV3 OR8T1P-201ENST00000421347 918 ntBASIC17.14■□□□□ 0.33
SMC1BQ8NDV3 PSAT1P2-201ENST00000426107 972 ntBASIC17.14■□□□□ 0.33
SMC1BQ8NDV3 IGHV3-43-201ENST00000434710 434 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
SMC1BQ8NDV3 CSHL1-206ENST00000450719 973 ntTSL 2 BASIC17.14■□□□□ 0.33
SMC1BQ8NDV3 STK24P1-201ENST00000455035 1291 ntBASIC17.14■□□□□ 0.33
SMC1BQ8NDV3 RN7SL173P-201ENST00000461853 292 ntBASIC17.14■□□□□ 0.33
SMC1BQ8NDV3 AC108474.1-201ENST00000507776 421 ntTSL 3 BASIC17.14■□□□□ 0.33
SMC1BQ8NDV3 AAMDC-207ENST00000527134 693 ntTSL 3 BASIC17.14■□□□□ 0.33
SMC1BQ8NDV3 GABARAPL1-213ENST00000544284 531 ntTSL 3 BASIC17.14■□□□□ 0.33
SMC1BQ8NDV3 AC009055.1-201ENST00000562656 781 ntTSL 3 BASIC17.14■□□□□ 0.33
SMC1BQ8NDV3 AC091304.3-201ENST00000566500 716 ntBASIC17.14■□□□□ 0.33
SMC1BQ8NDV3 MIR4640-201ENST00000581824 90 ntBASIC17.14■□□□□ 0.33
SMC1BQ8NDV3 RPL18A-203ENST00000599870 1084 ntTSL 2 BASIC17.14■□□□□ 0.33
SMC1BQ8NDV3 GGNBP1-204ENST00000613113 887 ntBASIC17.14■□□□□ 0.33
SMC1BQ8NDV3 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
SMC1BQ8NDV3 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
SMC1BQ8NDV3 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
SMC1BQ8NDV3 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SMC1BQ8NDV3 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SMC1BQ8NDV3 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
SMC1BQ8NDV3 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SMC1BQ8NDV3 FUK-207ENST00000571514 3054 ntTSL 2 BASIC17.14■□□□□ 0.33
SMC1BQ8NDV3 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SMC1BQ8NDV3 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SMC1BQ8NDV3 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC17.14■□□□□ 0.33
SMC1BQ8NDV3 DSCAM-AS1-202ENST00000427451 1640 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
SMC1BQ8NDV3 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
SMC1BQ8NDV3 ASGR1-209ENST00000619926 1384 ntTSL 5 BASIC17.14■□□□□ 0.33
SMC1BQ8NDV3 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SMC1BQ8NDV3 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
SMC1BQ8NDV3 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC17.13■□□□□ 0.33
SMC1BQ8NDV3 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SMC1BQ8NDV3 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
SMC1BQ8NDV3 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
SMC1BQ8NDV3 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
SMC1BQ8NDV3 ANXA3-202ENST00000503570 1524 ntTSL 5 BASIC17.13■□□□□ 0.33
SMC1BQ8NDV3 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SMC1BQ8NDV3 MED11-201ENST00000293777 833 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SMC1BQ8NDV3 MRPL18-201ENST00000367034 978 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SMC1BQ8NDV3 TNNT2-207ENST00000367322 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
SMC1BQ8NDV3 MIR611-201ENST00000384869 67 ntBASIC17.13■□□□□ 0.33
SMC1BQ8NDV3 AC136604.1-202ENST00000425471 771 ntBASIC17.13■□□□□ 0.33
SMC1BQ8NDV3 AL359458.1-201ENST00000430821 400 ntTSL 3 BASIC17.13■□□□□ 0.33
SMC1BQ8NDV3 CIDEC-205ENST00000443115 443 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SMC1BQ8NDV3 LAMTOR4-209ENST00000488241 613 ntTSL 2 BASIC17.13■□□□□ 0.33
SMC1BQ8NDV3 EXTL3-AS1-203ENST00000520023 780 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SMC1BQ8NDV3 MRPS10-201ENST00000053468 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SMC1BQ8NDV3 TNFSF13B-206ENST00000542136 495 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SMC1BQ8NDV3 ARL17B-203ENST00000570618 1140 ntTSL 2 BASIC17.13■□□□□ 0.33
SMC1BQ8NDV3 AC016586.1-201ENST00000600056 684 ntTSL 3 BASIC17.13■□□□□ 0.33
SMC1BQ8NDV3 AL133467.4-201ENST00000602953 725 ntBASIC17.13■□□□□ 0.33
SMC1BQ8NDV3 AL359091.4-201ENST00000610052 409 ntBASIC17.13■□□□□ 0.33
SMC1BQ8NDV3 AC139713.2-207ENST00000641556 1292 ntBASIC17.13■□□□□ 0.33
SMC1BQ8NDV3 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SMC1BQ8NDV3 AP002353.1-201ENST00000528257 1599 ntBASIC17.13■□□□□ 0.33
SMC1BQ8NDV3 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SMC1BQ8NDV3 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
SMC1BQ8NDV3 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC17.13■□□□□ 0.33
SMC1BQ8NDV3 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SMC1BQ8NDV3 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC17.13■□□□□ 0.33
SMC1BQ8NDV3 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC17.13■□□□□ 0.33
SMC1BQ8NDV3 REXO1L4P-201ENST00000605109 1937 ntBASIC17.13■□□□□ 0.33
SMC1BQ8NDV3 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
SMC1BQ8NDV3 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SMC1BQ8NDV3 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
SMC1BQ8NDV3 BANP-204ENST00000393208 2283 ntTSL 2 BASIC17.13■□□□□ 0.33
SMC1BQ8NDV3 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SMC1BQ8NDV3 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
SMC1BQ8NDV3 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
SMC1BQ8NDV3 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
SMC1BQ8NDV3 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
SMC1BQ8NDV3 AC069224.1-201ENST00000566372 1715 ntBASIC17.13■□□□□ 0.33
SMC1BQ8NDV3 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
SMC1BQ8NDV3 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SMC1BQ8NDV3 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
SMC1BQ8NDV3 VDAC2-202ENST00000313132 1467 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SMC1BQ8NDV3 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
SMC1BQ8NDV3 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SMC1BQ8NDV3 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC17.12■□□□□ 0.33
SMC1BQ8NDV3 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC17.12■□□□□ 0.33
SMC1BQ8NDV3 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC17.12■□□□□ 0.33
SMC1BQ8NDV3 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC17.12■□□□□ 0.33
SMC1BQ8NDV3 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
SMC1BQ8NDV3 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SMC1BQ8NDV3 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SMC1BQ8NDV3 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SMC1BQ8NDV3 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SMC1BQ8NDV3 Z82185.1-201ENST00000417792 549 ntTSL 4 BASIC17.12■□□□□ 0.33
SMC1BQ8NDV3 HNRNPA1P25-201ENST00000422644 937 ntBASIC17.12■□□□□ 0.33
SMC1BQ8NDV3 AP000244.1-201ENST00000424582 201 ntBASIC17.12■□□□□ 0.33
SMC1BQ8NDV3 SLC25A15P1-201ENST00000456738 342 ntBASIC17.12■□□□□ 0.33
SMC1BQ8NDV3 RN7SL128P-201ENST00000467883 305 ntBASIC17.12■□□□□ 0.33
SMC1BQ8NDV3 DLG4-206ENST00000485100 1004 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SMC1BQ8NDV3 SLC25A15P3-201ENST00000505530 290 ntBASIC17.12■□□□□ 0.33
SMC1BQ8NDV3 LY6E-215ENST00000523847 427 ntTSL 3 BASIC17.12■□□□□ 0.33
SMC1BQ8NDV3 ACER3-205ENST00000526597 1269 ntTSL 2 BASIC17.12■□□□□ 0.33
SMC1BQ8NDV3 PRR13-209ENST00000549924 625 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
SMC1BQ8NDV3 SRD5A3-AS1-203ENST00000591915 709 ntTSL 5 BASIC17.12■□□□□ 0.33
SMC1BQ8NDV3 RARS-210ENST00000626454 177 ntTSL 5 BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms