Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 FAM58BP-201ENST00000439056 645 ntBASIC15.93■□□□□ 0.14
VPS52Q8N1B4 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC15.93■□□□□ 0.14
VPS52Q8N1B4 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC15.93■□□□□ 0.14
VPS52Q8N1B4 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
VPS52Q8N1B4 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC15.93■□□□□ 0.14
VPS52Q8N1B4 SNORD3B-2-202ENST00000571722 791 ntBASIC15.93■□□□□ 0.14
VPS52Q8N1B4 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC15.93■□□□□ 0.14
VPS52Q8N1B4 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
VPS52Q8N1B4 SPCS2P2-201ENST00000603270 608 ntBASIC15.93■□□□□ 0.14
VPS52Q8N1B4 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
VPS52Q8N1B4 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC15.93■□□□□ 0.14
VPS52Q8N1B4 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
VPS52Q8N1B4 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC15.93■□□□□ 0.14
VPS52Q8N1B4 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC15.93■□□□□ 0.14
VPS52Q8N1B4 AC007686.3-201ENST00000619017 3487 ntBASIC15.93■□□□□ 0.14
VPS52Q8N1B4 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VPS52Q8N1B4 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
VPS52Q8N1B4 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
VPS52Q8N1B4 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC15.93■□□□□ 0.14
VPS52Q8N1B4 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
VPS52Q8N1B4 AC087386.2-201ENST00000623212 4637 ntBASIC15.93■□□□□ 0.14
VPS52Q8N1B4 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
VPS52Q8N1B4 SRC-202ENST00000373558 4304 ntTSL 5 BASIC15.93■□□□□ 0.14
VPS52Q8N1B4 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
VPS52Q8N1B4 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
VPS52Q8N1B4 ZBED1P1-201ENST00000502364 1930 ntBASIC15.92■□□□□ 0.14
VPS52Q8N1B4 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VPS52Q8N1B4 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VPS52Q8N1B4 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
VPS52Q8N1B4 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
VPS52Q8N1B4 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VPS52Q8N1B4 WASH3P-207ENST00000560956 1394 ntBASIC15.92■□□□□ 0.14
VPS52Q8N1B4 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VPS52Q8N1B4 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
VPS52Q8N1B4 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
VPS52Q8N1B4 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
VPS52Q8N1B4 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VPS52Q8N1B4 RN7SKP214-201ENST00000364208 315 ntBASIC15.92■□□□□ 0.14
VPS52Q8N1B4 RN7SKP230-201ENST00000365642 335 ntBASIC15.92■□□□□ 0.14
VPS52Q8N1B4 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VPS52Q8N1B4 HNRNPA1P41-201ENST00000397777 928 ntBASIC15.92■□□□□ 0.14
VPS52Q8N1B4 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC15.92■□□□□ 0.14
VPS52Q8N1B4 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
VPS52Q8N1B4 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
VPS52Q8N1B4 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC15.92■□□□□ 0.14
VPS52Q8N1B4 AC006335.1-201ENST00000445200 547 ntBASIC15.92■□□□□ 0.14
VPS52Q8N1B4 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC15.92■□□□□ 0.14
VPS52Q8N1B4 AL160314.3-201ENST00000556041 767 ntBASIC15.92■□□□□ 0.14
VPS52Q8N1B4 PRKXP1-201ENST00000561423 1122 ntBASIC15.92■□□□□ 0.14
VPS52Q8N1B4 CENPX-208ENST00000584347 799 ntTSL 2 BASIC15.92■□□□□ 0.14
VPS52Q8N1B4 MIR6727-201ENST00000620702 65 ntBASIC15.92■□□□□ 0.14
VPS52Q8N1B4 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
VPS52Q8N1B4 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC15.92■□□□□ 0.14
VPS52Q8N1B4 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VPS52Q8N1B4 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VPS52Q8N1B4 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
VPS52Q8N1B4 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
VPS52Q8N1B4 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
VPS52Q8N1B4 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VPS52Q8N1B4 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
VPS52Q8N1B4 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VPS52Q8N1B4 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC15.92■□□□□ 0.14
VPS52Q8N1B4 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
VPS52Q8N1B4 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC15.92■□□□□ 0.14
VPS52Q8N1B4 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VPS52Q8N1B4 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
VPS52Q8N1B4 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC15.92■□□□□ 0.14
VPS52Q8N1B4 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC15.92■□□□□ 0.14
VPS52Q8N1B4 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC15.92■□□□□ 0.14
VPS52Q8N1B4 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC15.92■□□□□ 0.14
VPS52Q8N1B4 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
VPS52Q8N1B4 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
VPS52Q8N1B4 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
VPS52Q8N1B4 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
VPS52Q8N1B4 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC15.91■□□□□ 0.14
VPS52Q8N1B4 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VPS52Q8N1B4 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VPS52Q8N1B4 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VPS52Q8N1B4 GRK6P1-201ENST00000400595 1711 ntBASIC15.91■□□□□ 0.14
VPS52Q8N1B4 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC15.91■□□□□ 0.14
VPS52Q8N1B4 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VPS52Q8N1B4 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VPS52Q8N1B4 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC15.91■□□□□ 0.14
VPS52Q8N1B4 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
VPS52Q8N1B4 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
VPS52Q8N1B4 ABR-205ENST00000544583 5595 ntTSL 2 BASIC15.91■□□□□ 0.14
VPS52Q8N1B4 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
VPS52Q8N1B4 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
VPS52Q8N1B4 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VPS52Q8N1B4 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
VPS52Q8N1B4 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
VPS52Q8N1B4 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC15.91■□□□□ 0.14
VPS52Q8N1B4 RBM38-204ENST00000371219 760 ntTSL 2 BASIC15.91■□□□□ 0.14
VPS52Q8N1B4 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
VPS52Q8N1B4 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
VPS52Q8N1B4 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
VPS52Q8N1B4 MPV17-204ENST00000399052 749 ntTSL 4 BASIC15.91■□□□□ 0.14
VPS52Q8N1B4 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC15.91■□□□□ 0.14
VPS52Q8N1B4 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
VPS52Q8N1B4 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC15.91■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms