Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 HLA-J-203ENST00000494367 1087 ntBASIC16.48■□□□□ 0.23
TPM4P67936 AC140878.1-201ENST00000565277 250 ntBASIC16.48■□□□□ 0.23
TPM4P67936 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC16.48■□□□□ 0.23
TPM4P67936 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC16.48■□□□□ 0.23
TPM4P67936 GOLGA7B-203ENST00000596005 6378 ntTSL 2 BASIC16.48■□□□□ 0.23
TPM4P67936 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
TPM4P67936 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC16.48■□□□□ 0.23
TPM4P67936 Z92544.3-201ENST00000624747 417 ntBASIC16.48■□□□□ 0.23
TPM4P67936 TCF23-201ENST00000296096 4882 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TPM4P67936 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TPM4P67936 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
TPM4P67936 FAM156A-221ENST00000622447 3757 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
TPM4P67936 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC16.48■□□□□ 0.23
TPM4P67936 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
TPM4P67936 ACSM2A-209ENST00000573854 2837 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TPM4P67936 ADGRD1-201ENST00000261654 5168 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TPM4P67936 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TPM4P67936 NTNG1-204ENST00000370067 4628 ntTSL 5 BASIC16.48■□□□□ 0.23
TPM4P67936 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC16.48■□□□□ 0.23
TPM4P67936 LINC01782-201ENST00000591212 2908 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TPM4P67936 XPOT-201ENST00000332707 6414 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
TPM4P67936 MFSD11-217ENST00000590514 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TPM4P67936 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
TPM4P67936 PML-203ENST00000354026 2885 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
TPM4P67936 IRF6-204ENST00000542854 4256 ntTSL 2 BASIC16.48■□□□□ 0.23
TPM4P67936 SLC44A1-202ENST00000374723 9640 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TPM4P67936 TOLLIP-202ENST00000317204 3617 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TPM4P67936 AMER2-201ENST00000357816 10055 ntTSL 2 BASIC16.47■□□□□ 0.23
TPM4P67936 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC16.47■□□□□ 0.23
TPM4P67936 BMF-201ENST00000354670 4687 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TPM4P67936 HS3ST5-201ENST00000312719 3901 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
TPM4P67936 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC16.47■□□□□ 0.23
TPM4P67936 PEAR1-201ENST00000292357 4866 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
TPM4P67936 SMC6-201ENST00000351948 5173 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TPM4P67936 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TPM4P67936 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
TPM4P67936 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC16.47■□□□□ 0.23
TPM4P67936 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TPM4P67936 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TPM4P67936 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TPM4P67936 TSEN2-202ENST00000402228 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TPM4P67936 RPSAP43-201ENST00000402237 625 ntBASIC16.47■□□□□ 0.23
TPM4P67936 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC16.47■□□□□ 0.23
TPM4P67936 LSM5-207ENST00000410044 687 ntTSL 3 BASIC16.47■□□□□ 0.23
TPM4P67936 CROT-203ENST00000419147 2959 ntTSL 2 BASIC16.47■□□□□ 0.23
TPM4P67936 UPF3AP3-201ENST00000420996 769 ntBASIC16.47■□□□□ 0.23
TPM4P67936 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC16.47■□□□□ 0.23
TPM4P67936 COX10-202ENST00000429152 875 ntTSL 2 BASIC16.47■□□□□ 0.23
TPM4P67936 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC16.47■□□□□ 0.23
TPM4P67936 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC16.47■□□□□ 0.23
TPM4P67936 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC16.47■□□□□ 0.23
TPM4P67936 AC026434.2-201ENST00000506094 1078 ntBASIC16.47■□□□□ 0.23
TPM4P67936 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC16.47■□□□□ 0.23
TPM4P67936 SP6-202ENST00000536300 3848 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
TPM4P67936 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC16.47■□□□□ 0.23
TPM4P67936 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC16.47■□□□□ 0.23
TPM4P67936 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TPM4P67936 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
TPM4P67936 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC16.47■□□□□ 0.23
TPM4P67936 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TPM4P67936 DUOX2-201ENST00000389039 6533 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
TPM4P67936 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TPM4P67936 PSEN2-202ENST00000366783 2306 ntAPPRIS P3 TSL 5 BASIC16.47■□□□□ 0.23
TPM4P67936 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
TPM4P67936 POLN-210ENST00000511885 3253 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
TPM4P67936 RUNX3-203ENST00000399916 4340 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
TPM4P67936 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TPM4P67936 AC003102.2-201ENST00000589195 1469 ntBASIC16.47■□□□□ 0.23
TPM4P67936 LINC00887-202ENST00000414120 2880 ntTSL 3 BASIC16.47■□□□□ 0.23
TPM4P67936 CACNA1G-214ENST00000505165 6633 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
TPM4P67936 EMILIN1-201ENST00000380320 3943 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TPM4P67936 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC16.47■□□□□ 0.23
TPM4P67936 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC16.47■□□□□ 0.23
TPM4P67936 RCAN3-207ENST00000538532 2640 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TPM4P67936 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TPM4P67936 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TPM4P67936 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
TPM4P67936 C19orf57-204ENST00000586783 2454 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
TPM4P67936 AC111170.3-201ENST00000624282 2464 ntBASIC16.46■□□□□ 0.23
TPM4P67936 DNM3-202ENST00000367731 7613 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
TPM4P67936 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC16.46■□□□□ 0.23
TPM4P67936 USP6NL-205ENST00000609104 11377 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
TPM4P67936 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC16.46■□□□□ 0.23
TPM4P67936 PRPF38A-201ENST00000257181 5274 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TPM4P67936 CPT1B-202ENST00000360719 2319 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
TPM4P67936 GOPC-202ENST00000368498 4450 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
TPM4P67936 NCOR2-204ENST00000405201 8533 ntAPPRIS P4 TSL 1 (best) BASIC16.46■□□□□ 0.23
TPM4P67936 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
TPM4P67936 DLGAP1-201ENST00000315677 6683 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
TPM4P67936 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TPM4P67936 CTIF-202ENST00000382998 4407 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
TPM4P67936 ZNF641-201ENST00000301042 4544 ntTSL 5 BASIC16.46■□□□□ 0.23
TPM4P67936 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TPM4P67936 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TPM4P67936 LINC00865-202ENST00000448963 4272 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
TPM4P67936 AC015909.5-201ENST00000624336 2266 ntBASIC16.46■□□□□ 0.23
TPM4P67936 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TPM4P67936 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
TPM4P67936 WRB-204ENST00000398753 699 ntTSL 3 BASIC16.46■□□□□ 0.23
TPM4P67936 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC16.46■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms