Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC13.21□□□□□ -0.29
SUMO3P55854 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC13.21□□□□□ -0.29
SUMO3P55854 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC13.21□□□□□ -0.29
SUMO3P55854 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC13.21□□□□□ -0.29
SUMO3P55854 AC124068.2-201ENST00000569473 1109 ntBASIC13.21□□□□□ -0.29
SUMO3P55854 RN7SL163P-201ENST00000583100 276 ntBASIC13.21□□□□□ -0.29
SUMO3P55854 AC008805.1-201ENST00000590892 364 ntBASIC13.21□□□□□ -0.29
SUMO3P55854 AL591471.1-201ENST00000621855 229 ntBASIC13.21□□□□□ -0.29
SUMO3P55854 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC13.21□□□□□ -0.29
SUMO3P55854 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC13.21□□□□□ -0.29
SUMO3P55854 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
SUMO3P55854 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
SUMO3P55854 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
SUMO3P55854 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
SUMO3P55854 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC13.21□□□□□ -0.3
SUMO3P55854 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC13.21□□□□□ -0.3
SUMO3P55854 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC13.21□□□□□ -0.3
SUMO3P55854 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.3
SUMO3P55854 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
SUMO3P55854 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
SUMO3P55854 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
SUMO3P55854 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
SUMO3P55854 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
SUMO3P55854 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
SUMO3P55854 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
SUMO3P55854 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
SUMO3P55854 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SUMO3P55854 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC13.2□□□□□ -0.3
SUMO3P55854 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SUMO3P55854 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SUMO3P55854 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
SUMO3P55854 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC13.2□□□□□ -0.3
SUMO3P55854 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC13.2□□□□□ -0.3
SUMO3P55854 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC13.2□□□□□ -0.3
SUMO3P55854 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
SUMO3P55854 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SUMO3P55854 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC13.2□□□□□ -0.3
SUMO3P55854 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SUMO3P55854 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
SUMO3P55854 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
SUMO3P55854 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SUMO3P55854 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SUMO3P55854 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC13.2□□□□□ -0.3
SUMO3P55854 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC13.2□□□□□ -0.3
SUMO3P55854 KRTAP10-13P-201ENST00000412914 571 ntBASIC13.2□□□□□ -0.3
SUMO3P55854 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
SUMO3P55854 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC13.2□□□□□ -0.3
SUMO3P55854 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC13.2□□□□□ -0.3
SUMO3P55854 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC13.2□□□□□ -0.3
SUMO3P55854 FADS2-212ENST00000522639 360 ntTSL 5 BASIC13.2□□□□□ -0.3
SUMO3P55854 AC126915.1-201ENST00000522847 1038 ntBASIC13.2□□□□□ -0.3
SUMO3P55854 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SUMO3P55854 AGER-214ENST00000538695 487 ntTSL 2 BASIC13.2□□□□□ -0.3
SUMO3P55854 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SUMO3P55854 AC003686.1-201ENST00000550956 1034 ntBASIC13.2□□□□□ -0.3
SUMO3P55854 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC13.2□□□□□ -0.3
SUMO3P55854 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
SUMO3P55854 FADS2-215ENST00000574708 385 ntTSL 3 BASIC13.2□□□□□ -0.3
SUMO3P55854 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC13.2□□□□□ -0.3
SUMO3P55854 KLK3-207ENST00000595952 969 ntTSL 3 BASIC13.2□□□□□ -0.3
SUMO3P55854 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC13.2□□□□□ -0.3
SUMO3P55854 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC13.2□□□□□ -0.3
SUMO3P55854 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
SUMO3P55854 AC022748.3-201ENST00000621828 275 ntBASIC13.2□□□□□ -0.3
SUMO3P55854 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
SUMO3P55854 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC13.2□□□□□ -0.3
SUMO3P55854 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SUMO3P55854 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
SUMO3P55854 AC026748.1-201ENST00000624349 3251 ntBASIC13.2□□□□□ -0.3
SUMO3P55854 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC13.2□□□□□ -0.3
SUMO3P55854 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC13.2□□□□□ -0.3
SUMO3P55854 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC13.2□□□□□ -0.3
SUMO3P55854 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
SUMO3P55854 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
SUMO3P55854 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
SUMO3P55854 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SUMO3P55854 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
SUMO3P55854 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC13.19□□□□□ -0.3
SUMO3P55854 MBLAC2-202ENST00000514906 1936 ntBASIC13.19□□□□□ -0.3
SUMO3P55854 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC13.19□□□□□ -0.3
SUMO3P55854 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC13.19□□□□□ -0.3
SUMO3P55854 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
SUMO3P55854 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SUMO3P55854 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SUMO3P55854 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC13.19□□□□□ -0.3
SUMO3P55854 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
SUMO3P55854 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
SUMO3P55854 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SUMO3P55854 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SUMO3P55854 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
SUMO3P55854 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SUMO3P55854 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SUMO3P55854 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
SUMO3P55854 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
SUMO3P55854 VDAC1P1-201ENST00000439229 848 ntBASIC13.19□□□□□ -0.3
SUMO3P55854 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
SUMO3P55854 RNMTL1P1-201ENST00000454103 560 ntBASIC13.19□□□□□ -0.3
SUMO3P55854 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
SUMO3P55854 RPL18P13-201ENST00000478088 569 ntBASIC13.19□□□□□ -0.3
SUMO3P55854 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms