Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
MSH6P52701 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC19.81■□□□□ 0.76
MSH6P52701 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
MSH6P52701 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC19.81■□□□□ 0.76
MSH6P52701 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
MSH6P52701 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
MSH6P52701 CNBP-205ENST00000500450 1516 ntTSL 2 BASIC19.81■□□□□ 0.76
MSH6P52701 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
MSH6P52701 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
MSH6P52701 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC19.81■□□□□ 0.76
MSH6P52701 CCL25-202ENST00000315626 450 ntTSL 2 BASIC19.81■□□□□ 0.76
MSH6P52701 HNRNPA1-201ENST00000330752 1294 ntTSL 5 BASIC19.81■□□□□ 0.76
MSH6P52701 PPP1R7-205ENST00000404405 1009 ntTSL 3 BASIC19.81■□□□□ 0.76
MSH6P52701 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC19.81■□□□□ 0.76
MSH6P52701 RHOQP2-201ENST00000449922 579 ntBASIC19.81■□□□□ 0.76
MSH6P52701 AC120498.7-201ENST00000562876 330 ntBASIC19.81■□□□□ 0.76
MSH6P52701 MIR4265-201ENST00000582152 99 ntBASIC19.81■□□□□ 0.76
MSH6P52701 AC006116.2-201ENST00000589958 988 ntBASIC19.81■□□□□ 0.76
MSH6P52701 NEK4P3-201ENST00000604859 544 ntBASIC19.81■□□□□ 0.76
MSH6P52701 MTUS1-229ENST00000634613 1193 ntTSL 5 BASIC19.81■□□□□ 0.76
MSH6P52701 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
MSH6P52701 AC136621.1-201ENST00000624017 2304 ntBASIC19.81■□□□□ 0.76
MSH6P52701 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC19.81■□□□□ 0.76
MSH6P52701 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
MSH6P52701 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
MSH6P52701 KRT8P18-201ENST00000413425 1445 ntBASIC19.8■□□□□ 0.76
MSH6P52701 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
MSH6P52701 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
MSH6P52701 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC19.8■□□□□ 0.76
MSH6P52701 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
MSH6P52701 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
MSH6P52701 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
MSH6P52701 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC19.8■□□□□ 0.76
MSH6P52701 HIST1H2BK-201ENST00000356950 381 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
MSH6P52701 KRTAP4-12-201ENST00000394014 1077 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
MSH6P52701 RPL14-203ENST00000416518 812 ntTSL 3 BASIC19.8■□□□□ 0.76
MSH6P52701 AC078785.1-204ENST00000460707 764 ntTSL 3 BASIC19.8■□□□□ 0.76
MSH6P52701 CU639417.1-201ENST00000464664 460 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
MSH6P52701 HNRNPA1P56-201ENST00000505767 954 ntBASIC19.8■□□□□ 0.76
MSH6P52701 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC19.8■□□□□ 0.76
MSH6P52701 POLR3G-207ENST00000514483 682 ntTSL 3 BASIC19.8■□□□□ 0.76
MSH6P52701 LINC00301-203ENST00000527161 749 ntTSL 2 BASIC19.8■□□□□ 0.76
MSH6P52701 BATF-202ENST00000555504 361 ntTSL 2 BASIC19.8■□□□□ 0.76
MSH6P52701 AC009055.1-201ENST00000562656 781 ntTSL 3 BASIC19.8■□□□□ 0.76
MSH6P52701 H2BFS-201ENST00000599962 460 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
MSH6P52701 AL136982.5-201ENST00000605222 294 ntBASIC19.8■□□□□ 0.76
MSH6P52701 URAHP-205ENST00000610227 398 ntBASIC19.8■□□□□ 0.76
MSH6P52701 HPX-213ENST00000615166 826 ntTSL 5 BASIC19.8■□□□□ 0.76
MSH6P52701 AC073869.4-201ENST00000620841 800 ntBASIC19.8■□□□□ 0.76
MSH6P52701 LINC01869-204ENST00000635639 1047 ntTSL 5 BASIC19.8■□□□□ 0.76
MSH6P52701 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
MSH6P52701 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
MSH6P52701 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
MSH6P52701 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
MSH6P52701 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
MSH6P52701 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
MSH6P52701 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC19.8■□□□□ 0.76
MSH6P52701 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
MSH6P52701 B3GNTL1-201ENST00000320865 1383 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
MSH6P52701 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC19.79■□□□□ 0.76
MSH6P52701 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
MSH6P52701 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
MSH6P52701 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
MSH6P52701 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
MSH6P52701 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
MSH6P52701 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
MSH6P52701 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
MSH6P52701 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
MSH6P52701 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
MSH6P52701 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC19.79■□□□□ 0.76
MSH6P52701 TRBV7-3-201ENST00000390361 397 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
MSH6P52701 AC098657.1-201ENST00000416270 1135 ntBASIC19.79■□□□□ 0.76
MSH6P52701 IGKV1OR-2-201ENST00000457995 350 ntBASIC19.79■□□□□ 0.76
MSH6P52701 TMEM222-203ENST00000464813 1071 ntTSL 2 BASIC19.79■□□□□ 0.76
MSH6P52701 AC005740.1-201ENST00000515639 522 ntBASIC19.79■□□□□ 0.76
MSH6P52701 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
MSH6P52701 GABARAPL1-213ENST00000544284 531 ntTSL 3 BASIC19.79■□□□□ 0.76
MSH6P52701 RN7SL556P-201ENST00000582856 298 ntBASIC19.79■□□□□ 0.76
MSH6P52701 HKR1-220ENST00000591259 734 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
MSH6P52701 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
MSH6P52701 C18orf15-201ENST00000623680 2534 ntBASIC19.79■□□□□ 0.76
MSH6P52701 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
MSH6P52701 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
MSH6P52701 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
MSH6P52701 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
MSH6P52701 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC19.79■□□□□ 0.76
MSH6P52701 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
MSH6P52701 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC19.79■□□□□ 0.76
MSH6P52701 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
MSH6P52701 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
MSH6P52701 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
MSH6P52701 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
MSH6P52701 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
MSH6P52701 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC19.78■□□□□ 0.76
MSH6P52701 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
MSH6P52701 PPT1-215ENST00000641471 2368 ntBASIC19.78■□□□□ 0.76
MSH6P52701 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC19.78■□□□□ 0.76
MSH6P52701 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC19.78■□□□□ 0.76
MSH6P52701 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
MSH6P52701 GOT2-202ENST00000434819 1615 ntTSL 2 BASIC19.78■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms