Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC16.64■□□□□ 0.25
SMARCA1P28370 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SMARCA1P28370 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC16.64■□□□□ 0.25
SMARCA1P28370 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SMARCA1P28370 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
SMARCA1P28370 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
SMARCA1P28370 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
SMARCA1P28370 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
SMARCA1P28370 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SMARCA1P28370 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC16.64■□□□□ 0.25
SMARCA1P28370 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SMARCA1P28370 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC16.64■□□□□ 0.25
SMARCA1P28370 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SMARCA1P28370 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
SMARCA1P28370 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SMARCA1P28370 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SMARCA1P28370 USP17L6P-201ENST00000382470 1197 ntBASIC16.64■□□□□ 0.25
SMARCA1P28370 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
SMARCA1P28370 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SMARCA1P28370 ACTG1P2-201ENST00000415776 1125 ntBASIC16.64■□□□□ 0.25
SMARCA1P28370 CMC1-204ENST00000423894 549 ntTSL 2 BASIC16.64■□□□□ 0.25
SMARCA1P28370 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
SMARCA1P28370 ACTG1P11-201ENST00000425411 1125 ntBASIC16.64■□□□□ 0.25
SMARCA1P28370 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC16.64■□□□□ 0.25
SMARCA1P28370 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC16.64■□□□□ 0.25
SMARCA1P28370 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
SMARCA1P28370 AC011603.2-203ENST00000547387 897 ntTSL 3 BASIC16.64■□□□□ 0.25
SMARCA1P28370 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
SMARCA1P28370 SKA2-205ENST00000580541 689 ntTSL 3 BASIC16.64■□□□□ 0.25
SMARCA1P28370 AL022334.2-201ENST00000610000 484 ntBASIC16.64■□□□□ 0.25
SMARCA1P28370 AC138627.1-207ENST00000641560 1006 ntBASIC16.64■□□□□ 0.25
SMARCA1P28370 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SMARCA1P28370 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
SMARCA1P28370 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SMARCA1P28370 CDC42SE2-202ENST00000395246 3485 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
SMARCA1P28370 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SMARCA1P28370 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SMARCA1P28370 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SMARCA1P28370 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
SMARCA1P28370 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SMARCA1P28370 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SMARCA1P28370 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC16.64■□□□□ 0.25
SMARCA1P28370 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
SMARCA1P28370 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SMARCA1P28370 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC16.63■□□□□ 0.25
SMARCA1P28370 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC16.63■□□□□ 0.25
SMARCA1P28370 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SMARCA1P28370 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC16.63■□□□□ 0.25
SMARCA1P28370 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC16.63■□□□□ 0.25
SMARCA1P28370 NORAD-201ENST00000565493 5339 ntBASIC16.63■□□□□ 0.25
SMARCA1P28370 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC16.63■□□□□ 0.25
SMARCA1P28370 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC16.63■□□□□ 0.25
SMARCA1P28370 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC16.63■□□□□ 0.25
SMARCA1P28370 AC012617.1-204ENST00000586340 2305 ntBASIC16.63■□□□□ 0.25
SMARCA1P28370 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SMARCA1P28370 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC16.63■□□□□ 0.25
SMARCA1P28370 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SMARCA1P28370 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SMARCA1P28370 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC16.63■□□□□ 0.25
SMARCA1P28370 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SMARCA1P28370 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
SMARCA1P28370 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
SMARCA1P28370 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
SMARCA1P28370 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
SMARCA1P28370 AC103592.1-201ENST00000394513 664 ntBASIC16.63■□□□□ 0.25
SMARCA1P28370 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC16.63■□□□□ 0.25
SMARCA1P28370 AL353637.1-201ENST00000451571 732 ntBASIC16.63■□□□□ 0.25
SMARCA1P28370 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC16.63■□□□□ 0.25
SMARCA1P28370 RN7SL530P-201ENST00000485097 298 ntBASIC16.63■□□□□ 0.25
SMARCA1P28370 AC090857.1-201ENST00000527400 390 ntBASIC16.63■□□□□ 0.25
SMARCA1P28370 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC16.63■□□□□ 0.25
SMARCA1P28370 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
SMARCA1P28370 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC16.63■□□□□ 0.25
SMARCA1P28370 AP001505.2-201ENST00000616815 443 ntBASIC16.63■□□□□ 0.25
SMARCA1P28370 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SMARCA1P28370 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
SMARCA1P28370 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC16.63■□□□□ 0.25
SMARCA1P28370 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC16.63■□□□□ 0.25
SMARCA1P28370 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
SMARCA1P28370 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC16.63■□□□□ 0.25
SMARCA1P28370 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC16.63■□□□□ 0.25
SMARCA1P28370 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SMARCA1P28370 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC16.62■□□□□ 0.25
SMARCA1P28370 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SMARCA1P28370 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SMARCA1P28370 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
SMARCA1P28370 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC16.62■□□□□ 0.25
SMARCA1P28370 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SMARCA1P28370 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SMARCA1P28370 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SMARCA1P28370 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC16.62■□□□□ 0.25
SMARCA1P28370 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC16.62■□□□□ 0.25
SMARCA1P28370 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SMARCA1P28370 AC007686.3-201ENST00000619017 3487 ntBASIC16.62■□□□□ 0.25
SMARCA1P28370 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SMARCA1P28370 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SMARCA1P28370 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
SMARCA1P28370 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SMARCA1P28370 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC16.62■□□□□ 0.25
SMARCA1P28370 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms