Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC17.24■□□□□ 0.35
HMGB1P09429 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC17.24■□□□□ 0.35
HMGB1P09429 EEF1DP1-201ENST00000585891 896 ntBASIC17.24■□□□□ 0.35
HMGB1P09429 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC17.24■□□□□ 0.35
HMGB1P09429 TMBIM7P-202ENST00000641474 1516 ntBASIC17.24■□□□□ 0.35
HMGB1P09429 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
HMGB1P09429 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC17.24■□□□□ 0.35
HMGB1P09429 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGB1P09429 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
HMGB1P09429 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC17.24■□□□□ 0.35
HMGB1P09429 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGB1P09429 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HMGB1P09429 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGB1P09429 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGB1P09429 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGB1P09429 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC17.24■□□□□ 0.35
HMGB1P09429 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC17.24■□□□□ 0.35
HMGB1P09429 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
HMGB1P09429 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGB1P09429 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
HMGB1P09429 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
HMGB1P09429 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGB1P09429 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGB1P09429 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGB1P09429 BEND3P1-201ENST00000421591 1944 ntBASIC17.23■□□□□ 0.35
HMGB1P09429 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HMGB1P09429 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGB1P09429 MST1P2-201ENST00000457982 2291 ntBASIC17.23■□□□□ 0.35
HMGB1P09429 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGB1P09429 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HMGB1P09429 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGB1P09429 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC17.23■□□□□ 0.35
HMGB1P09429 VAX1-201ENST00000277905 4494 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HMGB1P09429 ACKR3-201ENST00000272928 2203 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
HMGB1P09429 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGB1P09429 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
HMGB1P09429 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
HMGB1P09429 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HMGB1P09429 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGB1P09429 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HMGB1P09429 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC17.23■□□□□ 0.35
HMGB1P09429 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGB1P09429 TISP43-201ENST00000409793 538 ntTSL 4 BASIC17.23■□□□□ 0.35
HMGB1P09429 AC099336.1-201ENST00000417053 1171 ntBASIC17.23■□□□□ 0.35
HMGB1P09429 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC17.23■□□□□ 0.35
HMGB1P09429 AC022210.1-201ENST00000449856 793 ntBASIC17.23■□□□□ 0.35
HMGB1P09429 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC17.23■□□□□ 0.35
HMGB1P09429 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC17.23■□□□□ 0.35
HMGB1P09429 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC17.23■□□□□ 0.35
HMGB1P09429 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
HMGB1P09429 AC009884.2-201ENST00000603110 324 ntBASIC17.23■□□□□ 0.35
HMGB1P09429 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGB1P09429 AC011474.4-201ENST00000623523 2076 ntBASIC17.23■□□□□ 0.35
HMGB1P09429 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
HMGB1P09429 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
HMGB1P09429 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGB1P09429 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HMGB1P09429 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGB1P09429 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
HMGB1P09429 KCP-203ENST00000610776 5108 ntTSL 5 BASIC17.23■□□□□ 0.35
HMGB1P09429 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
HMGB1P09429 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC17.23■□□□□ 0.35
HMGB1P09429 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
HMGB1P09429 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC17.23■□□□□ 0.35
HMGB1P09429 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGB1P09429 AC244394.1-201ENST00000435000 1665 ntBASIC17.23■□□□□ 0.35
HMGB1P09429 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC17.23■□□□□ 0.35
HMGB1P09429 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HMGB1P09429 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HMGB1P09429 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
HMGB1P09429 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGB1P09429 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC17.22■□□□□ 0.35
HMGB1P09429 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC17.22■□□□□ 0.35
HMGB1P09429 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGB1P09429 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC17.22■□□□□ 0.35
HMGB1P09429 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGB1P09429 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGB1P09429 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC17.22■□□□□ 0.35
HMGB1P09429 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC17.22■□□□□ 0.35
HMGB1P09429 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC17.22■□□□□ 0.35
HMGB1P09429 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HMGB1P09429 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGB1P09429 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGB1P09429 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGB1P09429 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGB1P09429 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HMGB1P09429 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
HMGB1P09429 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HMGB1P09429 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC17.22■□□□□ 0.35
HMGB1P09429 AC012441.2-201ENST00000444843 739 ntBASIC17.22■□□□□ 0.35
HMGB1P09429 HNRNPA1P36-201ENST00000521313 955 ntBASIC17.22■□□□□ 0.35
HMGB1P09429 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
HMGB1P09429 AC133552.6-201ENST00000613406 534 ntBASIC17.22■□□□□ 0.35
HMGB1P09429 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
HMGB1P09429 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HMGB1P09429 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
HMGB1P09429 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGB1P09429 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HMGB1P09429 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
HMGB1P09429 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms