Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 SMAD7-208ENST00000591805 1152 ntTSL 2 BASIC12.43□□□□□ -0.42
COL12A1Q99715 OVOL3-202ENST00000633214 675 ntAPPRIS P2 TSL 5 BASIC12.43□□□□□ -0.42
COL12A1Q99715 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
COL12A1Q99715 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC12.43□□□□□ -0.42
COL12A1Q99715 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
COL12A1Q99715 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
COL12A1Q99715 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
COL12A1Q99715 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
COL12A1Q99715 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC12.43□□□□□ -0.42
COL12A1Q99715 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
COL12A1Q99715 PDXDC2P-206ENST00000534700 1315 ntBASIC12.43□□□□□ -0.42
COL12A1Q99715 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC12.43□□□□□ -0.42
COL12A1Q99715 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
COL12A1Q99715 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
COL12A1Q99715 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
COL12A1Q99715 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
COL12A1Q99715 MIR339-201ENST00000362153 94 ntBASIC12.43□□□□□ -0.42
COL12A1Q99715 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
COL12A1Q99715 TMEM14B-215ENST00000481240 1032 ntTSL 2 BASIC12.43□□□□□ -0.42
COL12A1Q99715 THEG-204ENST00000530711 1162 ntAPPRIS ALT2 TSL 3 BASIC12.43□□□□□ -0.42
COL12A1Q99715 AL133453.1-201ENST00000554055 581 ntTSL 3 BASIC12.43□□□□□ -0.42
COL12A1Q99715 SRP54-AS1-204ENST00000556705 580 ntTSL 2 BASIC12.43□□□□□ -0.42
COL12A1Q99715 GRAMD4P6-201ENST00000556999 244 ntBASIC12.43□□□□□ -0.42
COL12A1Q99715 AC090386.2-201ENST00000623010 1039 ntBASIC12.43□□□□□ -0.42
COL12A1Q99715 AL121956.4-201ENST00000629925 581 ntTSL 5 BASIC12.43□□□□□ -0.42
COL12A1Q99715 LINC01002-223ENST00000633179 407 ntTSL 5 BASIC12.43□□□□□ -0.42
COL12A1Q99715 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
COL12A1Q99715 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
COL12A1Q99715 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC12.43□□□□□ -0.42
COL12A1Q99715 WNT8A-202ENST00000398754 1498 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
COL12A1Q99715 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC12.43□□□□□ -0.42
COL12A1Q99715 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC12.43□□□□□ -0.42
COL12A1Q99715 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC12.43□□□□□ -0.42
COL12A1Q99715 TFG-208ENST00000490574 1696 ntAPPRIS P3 TSL 3 BASIC12.43□□□□□ -0.42
COL12A1Q99715 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
COL12A1Q99715 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
COL12A1Q99715 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC12.43□□□□□ -0.42
COL12A1Q99715 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
COL12A1Q99715 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC12.43□□□□□ -0.42
COL12A1Q99715 IGLV3-9-201ENST00000390316 461 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
COL12A1Q99715 CRYZL1-205ENST00000399442 612 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
COL12A1Q99715 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC12.43□□□□□ -0.42
COL12A1Q99715 AC006059.1-201ENST00000438017 722 ntTSL 5 BASIC12.43□□□□□ -0.42
COL12A1Q99715 KRT18P62-201ENST00000446618 1287 ntBASIC12.43□□□□□ -0.42
COL12A1Q99715 RN7SL524P-201ENST00000581152 300 ntBASIC12.43□□□□□ -0.42
COL12A1Q99715 AC093495.1-215ENST00000626655 821 ntTSL 5 BASIC12.43□□□□□ -0.42
COL12A1Q99715 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
COL12A1Q99715 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
COL12A1Q99715 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
COL12A1Q99715 SRP9-201ENST00000304786 1480 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
COL12A1Q99715 AC007952.5-201ENST00000572818 1486 ntBASIC12.43□□□□□ -0.42
COL12A1Q99715 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
COL12A1Q99715 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC12.43□□□□□ -0.42
COL12A1Q99715 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC12.42□□□□□ -0.42
COL12A1Q99715 SEC13-202ENST00000350697 1425 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL12A1Q99715 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
COL12A1Q99715 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL12A1Q99715 TUBAL3-201ENST00000380419 1798 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL12A1Q99715 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
COL12A1Q99715 CIDEC-204ENST00000430427 877 ntTSL 3 BASIC12.42□□□□□ -0.42
COL12A1Q99715 AP002856.3-201ENST00000441665 635 ntTSL 3 BASIC12.42□□□□□ -0.42
COL12A1Q99715 AC007679.1-201ENST00000458609 502 ntBASIC12.42□□□□□ -0.42
COL12A1Q99715 MARK2P17-201ENST00000498560 841 ntBASIC12.42□□□□□ -0.42
COL12A1Q99715 CCNL2P1-201ENST00000512846 969 ntBASIC12.42□□□□□ -0.42
COL12A1Q99715 AC087442.1-201ENST00000525563 249 ntTSL 2 BASIC12.42□□□□□ -0.42
COL12A1Q99715 FAM60A-207ENST00000542983 738 ntTSL 4 BASIC12.42□□□□□ -0.42
COL12A1Q99715 HIST2H4A-201ENST00000578186 583 ntAPPRIS P1 BASIC12.42□□□□□ -0.42
COL12A1Q99715 AC091769.1-201ENST00000619576 568 ntBASIC12.42□□□□□ -0.42
COL12A1Q99715 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
COL12A1Q99715 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
COL12A1Q99715 ODCP-201ENST00000459650 1639 ntBASIC12.42□□□□□ -0.42
COL12A1Q99715 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL12A1Q99715 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC12.42□□□□□ -0.42
COL12A1Q99715 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL12A1Q99715 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
COL12A1Q99715 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL12A1Q99715 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
COL12A1Q99715 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
COL12A1Q99715 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC12.42□□□□□ -0.42
COL12A1Q99715 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC12.42□□□□□ -0.42
COL12A1Q99715 CFAP36-204ENST00000406691 1575 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
COL12A1Q99715 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC12.42□□□□□ -0.42
COL12A1Q99715 OASL-202ENST00000339275 1492 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
COL12A1Q99715 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL12A1Q99715 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
COL12A1Q99715 HNRNPC-205ENST00000553300 1375 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL12A1Q99715 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL12A1Q99715 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC12.42□□□□□ -0.42
COL12A1Q99715 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL12A1Q99715 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL12A1Q99715 CELA3A-202ENST00000374663 649 ntTSL 2 BASIC12.42□□□□□ -0.42
COL12A1Q99715 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL12A1Q99715 RPL5P21-201ENST00000404620 815 ntBASIC12.42□□□□□ -0.42
COL12A1Q99715 FTH1P18-201ENST00000412071 549 ntBASIC12.42□□□□□ -0.42
COL12A1Q99715 EIF2B5-202ENST00000432569 984 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
COL12A1Q99715 AC078882.1-201ENST00000436132 416 ntTSL 2 BASIC12.42□□□□□ -0.42
COL12A1Q99715 Z69733.1-201ENST00000445990 632 ntTSL 3 BASIC12.42□□□□□ -0.42
COL12A1Q99715 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL12A1Q99715 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL12A1Q99715 SCAMP5-216ENST00000568081 710 ntTSL 2 BASIC12.42□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 62.5 ms