Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 AL391825.1-201ENST00000457671 1364 ntBASIC13.72□□□□□ -0.21
CDH12P55289 HNRNPA1P48-201ENST00000562726 1377 ntBASIC13.72□□□□□ -0.21
CDH12P55289 SP6-202ENST00000536300 3848 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
CDH12P55289 SELENON-202ENST00000361547 4334 ntAPPRIS P4 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDH12P55289 SDC2-201ENST00000302190 3759 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDH12P55289 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDH12P55289 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDH12P55289 SSTR1-201ENST00000267377 4295 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
CDH12P55289 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
CDH12P55289 NUTM2G-201ENST00000354649 2851 ntAPPRIS P3 TSL 5 BASIC13.72□□□□□ -0.21
CDH12P55289 PSME3-203ENST00000541124 3366 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CDH12P55289 CDH3-201ENST00000264012 4929 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDH12P55289 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC13.72□□□□□ -0.21
CDH12P55289 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDH12P55289 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDH12P55289 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CDH12P55289 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CDH12P55289 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDH12P55289 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC13.72□□□□□ -0.21
CDH12P55289 AC007969.1-201ENST00000433675 447 ntBASIC13.72□□□□□ -0.21
CDH12P55289 MYCLP2-201ENST00000449268 967 ntBASIC13.72□□□□□ -0.21
CDH12P55289 TSPY16P-201ENST00000449843 468 ntBASIC13.72□□□□□ -0.21
CDH12P55289 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC13.72□□□□□ -0.21
CDH12P55289 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC13.72□□□□□ -0.21
CDH12P55289 AC004233.3-201ENST00000607794 1269 ntBASIC13.72□□□□□ -0.21
CDH12P55289 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
CDH12P55289 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDH12P55289 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDH12P55289 AC011498.7-201ENST00000624986 2027 ntBASIC13.72□□□□□ -0.21
CDH12P55289 IL20RA-203ENST00000367748 3522 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CDH12P55289 COBL-205ENST00000441453 3785 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CDH12P55289 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC13.72□□□□□ -0.21
CDH12P55289 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC13.72□□□□□ -0.21
CDH12P55289 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC13.72□□□□□ -0.21
CDH12P55289 EMILIN1-201ENST00000380320 3943 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDH12P55289 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CDH12P55289 SEZ6L-206ENST00000404234 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDH12P55289 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDH12P55289 ADAMTSL4-203ENST00000369039 4319 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
CDH12P55289 MCHR1-201ENST00000249016 2851 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDH12P55289 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CDH12P55289 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
CDH12P55289 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDH12P55289 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDH12P55289 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC13.72□□□□□ -0.21
CDH12P55289 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
CDH12P55289 CALML3-201ENST00000315238 2763 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
CDH12P55289 GIPC3-201ENST00000322315 4335 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CDH12P55289 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
CDH12P55289 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC13.71□□□□□ -0.21
CDH12P55289 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC13.71□□□□□ -0.21
CDH12P55289 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
CDH12P55289 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CDH12P55289 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC13.71□□□□□ -0.21
CDH12P55289 TRPV4-202ENST00000418703 3247 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CDH12P55289 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CDH12P55289 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CDH12P55289 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CDH12P55289 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CDH12P55289 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC13.71□□□□□ -0.21
CDH12P55289 B9D1-203ENST00000395615 805 ntTSL 3 BASIC13.71□□□□□ -0.21
CDH12P55289 AC087499.6-201ENST00000411576 835 ntBASIC13.71□□□□□ -0.21
CDH12P55289 EIF3FP3-201ENST00000434851 1086 ntBASIC13.71□□□□□ -0.21
CDH12P55289 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC13.71□□□□□ -0.21
CDH12P55289 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC13.71□□□□□ -0.21
CDH12P55289 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC13.71□□□□□ -0.21
CDH12P55289 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC13.71□□□□□ -0.21
CDH12P55289 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CDH12P55289 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC13.71□□□□□ -0.21
CDH12P55289 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC13.71□□□□□ -0.21
CDH12P55289 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC13.71□□□□□ -0.21
CDH12P55289 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC13.71□□□□□ -0.21
CDH12P55289 AC027796.2-201ENST00000575326 344 ntBASIC13.71□□□□□ -0.21
CDH12P55289 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC13.71□□□□□ -0.21
CDH12P55289 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC13.71□□□□□ -0.21
CDH12P55289 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CDH12P55289 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC13.71□□□□□ -0.21
CDH12P55289 AJ011932.1-201ENST00000621707 465 ntBASIC13.71□□□□□ -0.21
CDH12P55289 AC005252.2-201ENST00000624630 1141 ntBASIC13.71□□□□□ -0.21
CDH12P55289 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CDH12P55289 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
CDH12P55289 CEP70-201ENST00000264982 2732 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
CDH12P55289 ATRIP-204ENST00000412052 2721 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CDH12P55289 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC13.71□□□□□ -0.21
CDH12P55289 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CDH12P55289 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.22
CDH12P55289 AC015688.4-201ENST00000580780 1647 ntBASIC13.71□□□□□ -0.22
CDH12P55289 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC13.71□□□□□ -0.22
CDH12P55289 HAGLR-202ENST00000416928 4235 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
CDH12P55289 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.22
CDH12P55289 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDH12P55289 EP400NL-206ENST00000446190 3697 ntTSL 2 BASIC13.7□□□□□ -0.22
CDH12P55289 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDH12P55289 LRRC59-203ENST00000576448 1531 ntBASIC13.7□□□□□ -0.22
CDH12P55289 FIG4-201ENST00000230124 3011 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDH12P55289 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC13.7□□□□□ -0.22
CDH12P55289 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
CDH12P55289 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDH12P55289 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CDH12P55289 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC13.7□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms