Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
RFX3P48380 FAM122B-202ENST00000343004 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
RFX3P48380 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
RFX3P48380 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
RFX3P48380 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
RFX3P48380 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC13.87□□□□□ -0.19
RFX3P48380 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
RFX3P48380 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
RFX3P48380 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC13.87□□□□□ -0.19
RFX3P48380 AC005229.1-201ENST00000392885 409 ntBASIC13.87□□□□□ -0.19
RFX3P48380 B9D1-203ENST00000395615 805 ntTSL 3 BASIC13.87□□□□□ -0.19
RFX3P48380 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC13.87□□□□□ -0.19
RFX3P48380 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC13.87□□□□□ -0.19
RFX3P48380 AC005034.1-201ENST00000426657 489 ntBASIC13.87□□□□□ -0.19
RFX3P48380 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC13.87□□□□□ -0.19
RFX3P48380 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC13.87□□□□□ -0.19
RFX3P48380 FTH1P14-201ENST00000482930 551 ntBASIC13.87□□□□□ -0.19
RFX3P48380 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC13.87□□□□□ -0.19
RFX3P48380 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC13.87□□□□□ -0.19
RFX3P48380 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC13.87□□□□□ -0.19
RFX3P48380 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC13.87□□□□□ -0.19
RFX3P48380 RBM7-207ENST00000544582 692 ntTSL 3 BASIC13.87□□□□□ -0.19
RFX3P48380 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC13.87□□□□□ -0.19
RFX3P48380 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC13.87□□□□□ -0.19
RFX3P48380 BTNL10-201ENST00000595971 695 ntBASIC13.87□□□□□ -0.19
RFX3P48380 ENPP7P14-201ENST00000621765 1040 ntBASIC13.87□□□□□ -0.19
RFX3P48380 AC113367.3-201ENST00000508316 1912 ntBASIC13.87□□□□□ -0.19
RFX3P48380 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
RFX3P48380 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
RFX3P48380 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
RFX3P48380 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC13.87□□□□□ -0.19
RFX3P48380 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC13.87□□□□□ -0.19
RFX3P48380 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
RFX3P48380 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC13.87□□□□□ -0.19
RFX3P48380 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
RFX3P48380 BDKRB2-202ENST00000542454 6845 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
RFX3P48380 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC13.87□□□□□ -0.19
RFX3P48380 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC13.87□□□□□ -0.19
RFX3P48380 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
RFX3P48380 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC13.87□□□□□ -0.19
RFX3P48380 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
RFX3P48380 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
RFX3P48380 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC13.87□□□□□ -0.19
RFX3P48380 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
RFX3P48380 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
RFX3P48380 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
RFX3P48380 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
RFX3P48380 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
RFX3P48380 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC13.86□□□□□ -0.19
RFX3P48380 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
RFX3P48380 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
RFX3P48380 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
RFX3P48380 VCP-201ENST00000358901 4370 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
RFX3P48380 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
RFX3P48380 SYNPO-205ENST00000522122 5098 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
RFX3P48380 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
RFX3P48380 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
RFX3P48380 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC13.86□□□□□ -0.19
RFX3P48380 OS9-207ENST00000439210 1946 ntTSL 2 BASIC13.86□□□□□ -0.19
RFX3P48380 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC13.86□□□□□ -0.19
RFX3P48380 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC13.86□□□□□ -0.19
RFX3P48380 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
RFX3P48380 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC13.86□□□□□ -0.19
RFX3P48380 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC13.86□□□□□ -0.19
RFX3P48380 KCTD7-201ENST00000275532 4795 ntTSL 4 BASIC13.86□□□□□ -0.19
RFX3P48380 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC13.86□□□□□ -0.19
RFX3P48380 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
RFX3P48380 POU2F2-202ENST00000389341 6901 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
RFX3P48380 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
RFX3P48380 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
RFX3P48380 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
RFX3P48380 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC13.86□□□□□ -0.19
RFX3P48380 KRT43P-201ENST00000434019 910 ntBASIC13.86□□□□□ -0.19
RFX3P48380 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
RFX3P48380 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC13.86□□□□□ -0.19
RFX3P48380 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC13.86□□□□□ -0.19
RFX3P48380 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC13.86□□□□□ -0.19
RFX3P48380 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
RFX3P48380 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC13.86□□□□□ -0.19
RFX3P48380 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC13.86□□□□□ -0.19
RFX3P48380 AC244669.2-201ENST00000612320 853 ntBASIC13.86□□□□□ -0.19
RFX3P48380 AL603764.1-201ENST00000636452 321 ntBASIC13.86□□□□□ -0.19
RFX3P48380 PDE8A-201ENST00000310298 3984 ntAPPRIS P4 TSL 1 (best) BASIC13.86□□□□□ -0.19
RFX3P48380 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
RFX3P48380 TIPARP-201ENST00000295924 4109 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
RFX3P48380 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
RFX3P48380 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
RFX3P48380 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
RFX3P48380 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC13.86□□□□□ -0.19
RFX3P48380 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC13.86□□□□□ -0.19
RFX3P48380 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
RFX3P48380 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
RFX3P48380 AC020910.5-201ENST00000623668 1865 ntBASIC13.86□□□□□ -0.19
RFX3P48380 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
RFX3P48380 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
RFX3P48380 CCDC88A-204ENST00000413716 9586 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
RFX3P48380 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
RFX3P48380 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
RFX3P48380 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
RFX3P48380 UNC13B-202ENST00000378496 5063 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 118.8 ms