Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SMARCA1P28370 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC16.67■□□□□ 0.26
SMARCA1P28370 AC007952.5-201ENST00000572818 1486 ntBASIC16.67■□□□□ 0.26
SMARCA1P28370 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
SMARCA1P28370 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SMARCA1P28370 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC16.66■□□□□ 0.26
SMARCA1P28370 GOLGA8VP-201ENST00000559009 1798 ntBASIC16.66■□□□□ 0.26
SMARCA1P28370 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC16.66■□□□□ 0.26
SMARCA1P28370 HSPA8P5-201ENST00000456928 2069 ntBASIC16.66■□□□□ 0.26
SMARCA1P28370 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC16.66■□□□□ 0.26
SMARCA1P28370 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC16.66■□□□□ 0.26
SMARCA1P28370 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SMARCA1P28370 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SMARCA1P28370 TCAM1P-207ENST00000485295 1537 ntBASIC16.66■□□□□ 0.26
SMARCA1P28370 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC16.66■□□□□ 0.26
SMARCA1P28370 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SMARCA1P28370 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SMARCA1P28370 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SMARCA1P28370 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC16.66■□□□□ 0.26
SMARCA1P28370 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
SMARCA1P28370 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SMARCA1P28370 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC16.66■□□□□ 0.26
SMARCA1P28370 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
SMARCA1P28370 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SMARCA1P28370 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
SMARCA1P28370 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SMARCA1P28370 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
SMARCA1P28370 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC16.66■□□□□ 0.26
SMARCA1P28370 AL022313.4-201ENST00000562756 2046 ntBASIC16.66■□□□□ 0.26
SMARCA1P28370 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SMARCA1P28370 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SMARCA1P28370 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SMARCA1P28370 TKT-201ENST00000296289 1931 ntTSL 5 BASIC16.66■□□□□ 0.26
SMARCA1P28370 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SMARCA1P28370 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC16.66■□□□□ 0.26
SMARCA1P28370 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SMARCA1P28370 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
SMARCA1P28370 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SMARCA1P28370 TUBB8P4-201ENST00000511806 1324 ntBASIC16.66■□□□□ 0.26
SMARCA1P28370 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC16.66■□□□□ 0.26
SMARCA1P28370 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SMARCA1P28370 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SMARCA1P28370 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SMARCA1P28370 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SMARCA1P28370 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC16.65■□□□□ 0.26
SMARCA1P28370 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SMARCA1P28370 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC16.65■□□□□ 0.26
SMARCA1P28370 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC16.65■□□□□ 0.26
SMARCA1P28370 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SMARCA1P28370 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC16.65■□□□□ 0.26
SMARCA1P28370 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SMARCA1P28370 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
SMARCA1P28370 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SMARCA1P28370 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC16.65■□□□□ 0.26
SMARCA1P28370 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SMARCA1P28370 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
SMARCA1P28370 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SMARCA1P28370 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC16.65■□□□□ 0.26
SMARCA1P28370 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC16.65■□□□□ 0.26
SMARCA1P28370 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SMARCA1P28370 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SMARCA1P28370 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
SMARCA1P28370 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC16.65■□□□□ 0.26
SMARCA1P28370 ISCA2P1-201ENST00000425548 448 ntBASIC16.65■□□□□ 0.26
SMARCA1P28370 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC16.65■□□□□ 0.26
SMARCA1P28370 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC16.65■□□□□ 0.26
SMARCA1P28370 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC16.65■□□□□ 0.26
SMARCA1P28370 POU5F1P2-201ENST00000521750 823 ntBASIC16.65■□□□□ 0.26
SMARCA1P28370 AC024681.1-201ENST00000521917 487 ntBASIC16.65■□□□□ 0.26
SMARCA1P28370 AL512310.5-201ENST00000551999 515 ntBASIC16.65■□□□□ 0.26
SMARCA1P28370 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC16.65■□□□□ 0.26
SMARCA1P28370 AC093752.3-201ENST00000567343 901 ntBASIC16.65■□□□□ 0.26
SMARCA1P28370 ASNA1-205ENST00000611688 1214 ntTSL 5 BASIC16.65■□□□□ 0.26
SMARCA1P28370 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC16.65■□□□□ 0.26
SMARCA1P28370 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC16.65■□□□□ 0.26
SMARCA1P28370 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC16.65■□□□□ 0.26
SMARCA1P28370 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC16.65■□□□□ 0.26
SMARCA1P28370 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SMARCA1P28370 AP002414.2-201ENST00000591780 3365 ntBASIC16.65■□□□□ 0.26
SMARCA1P28370 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SMARCA1P28370 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC16.65■□□□□ 0.26
SMARCA1P28370 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC16.65■□□□□ 0.26
SMARCA1P28370 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SMARCA1P28370 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SMARCA1P28370 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC16.65■□□□□ 0.26
SMARCA1P28370 SHMT1P1-201ENST00000419974 1312 ntBASIC16.65■□□□□ 0.26
SMARCA1P28370 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
SMARCA1P28370 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
SMARCA1P28370 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SMARCA1P28370 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SMARCA1P28370 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC16.65■□□□□ 0.26
SMARCA1P28370 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
SMARCA1P28370 AC008132.1-202ENST00000342005 1389 ntBASIC16.64■□□□□ 0.26
SMARCA1P28370 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
SMARCA1P28370 HSPA7-201ENST00000445535 1927 ntBASIC16.64■□□□□ 0.26
SMARCA1P28370 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.26
SMARCA1P28370 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.26
SMARCA1P28370 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SMARCA1P28370 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC16.64■□□□□ 0.25
SMARCA1P28370 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms