Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL9A1P20849 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL9A1P20849 LINC01165-201ENST00000445190 1623 ntBASIC14.94□□□□□ -0.02
COL9A1P20849 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
COL9A1P20849 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL9A1P20849 SLC25A3-216ENST00000551917 1359 ntAPPRIS P4 TSL 2 BASIC14.94□□□□□ -0.02
COL9A1P20849 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
COL9A1P20849 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
COL9A1P20849 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
COL9A1P20849 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL9A1P20849 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
COL9A1P20849 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL9A1P20849 AC013726.1-201ENST00000563747 2285 ntBASIC14.94□□□□□ -0.02
COL9A1P20849 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL9A1P20849 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL9A1P20849 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC14.93□□□□□ -0.02
COL9A1P20849 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC14.93□□□□□ -0.02
COL9A1P20849 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL9A1P20849 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL9A1P20849 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL9A1P20849 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC14.93□□□□□ -0.02
COL9A1P20849 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC14.93□□□□□ -0.02
COL9A1P20849 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
COL9A1P20849 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL9A1P20849 RBFOX3-203ENST00000580155 1519 ntAPPRIS P2 TSL 2 BASIC14.93□□□□□ -0.02
COL9A1P20849 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL9A1P20849 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL9A1P20849 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL9A1P20849 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC14.93□□□□□ -0.02
COL9A1P20849 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL9A1P20849 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL9A1P20849 TMSB15A-201ENST00000289373 685 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL9A1P20849 TRMT13-201ENST00000370139 711 ntTSL 3 BASIC14.93□□□□□ -0.02
COL9A1P20849 SFMBT2-202ENST00000379711 692 ntTSL 5 BASIC14.93□□□□□ -0.02
COL9A1P20849 PRR23A-201ENST00000383163 801 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
COL9A1P20849 LINC00463-201ENST00000413501 1147 ntTSL 3 BASIC14.93□□□□□ -0.02
COL9A1P20849 EIF2B5-202ENST00000432569 984 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL9A1P20849 ASGR2-203ENST00000446679 879 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL9A1P20849 SEPHS1P7-201ENST00000452995 1177 ntBASIC14.93□□□□□ -0.02
COL9A1P20849 AC009517.1-201ENST00000454750 570 ntBASIC14.93□□□□□ -0.02
COL9A1P20849 TXNRD2-206ENST00000462330 1129 ntTSL 3 BASIC14.93□□□□□ -0.02
COL9A1P20849 AC004889.1-205ENST00000493248 531 ntTSL 4 BASIC14.93□□□□□ -0.02
COL9A1P20849 OR2A1-AS1-210ENST00000496968 531 ntBASIC14.93□□□□□ -0.02
COL9A1P20849 ISL1-203ENST00000511384 981 ntTSL 5 BASIC14.93□□□□□ -0.02
COL9A1P20849 AC015795.2-201ENST00000512720 575 ntTSL 3 BASIC14.93□□□□□ -0.02
COL9A1P20849 LY6E-215ENST00000523847 427 ntTSL 3 BASIC14.93□□□□□ -0.02
COL9A1P20849 AL356019.1-201ENST00000553419 748 ntTSL 2 BASIC14.93□□□□□ -0.02
COL9A1P20849 AC016266.1-201ENST00000557558 729 ntTSL 3 BASIC14.93□□□□□ -0.02
COL9A1P20849 AC027601.3-201ENST00000622907 509 ntBASIC14.93□□□□□ -0.02
COL9A1P20849 MTUS1-229ENST00000634613 1193 ntTSL 5 BASIC14.93□□□□□ -0.02
COL9A1P20849 AC027559.1-203ENST00000635726 517 ntTSL 5 BASIC14.93□□□□□ -0.02
COL9A1P20849 AC005865.2-202ENST00000635814 725 ntBASIC14.93□□□□□ -0.02
COL9A1P20849 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
COL9A1P20849 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC14.93□□□□□ -0.02
COL9A1P20849 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL9A1P20849 AC026786.1-201ENST00000540096 1374 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
COL9A1P20849 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
COL9A1P20849 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL9A1P20849 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC14.93□□□□□ -0.02
COL9A1P20849 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL9A1P20849 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL9A1P20849 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
COL9A1P20849 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC14.93□□□□□ -0.02
COL9A1P20849 MROH4P-201ENST00000431302 1578 ntBASIC14.93□□□□□ -0.02
COL9A1P20849 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL9A1P20849 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL9A1P20849 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL9A1P20849 FAM168A-202ENST00000356467 1767 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL9A1P20849 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL9A1P20849 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
COL9A1P20849 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL9A1P20849 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
COL9A1P20849 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL9A1P20849 ANKDD1A-202ENST00000395720 1518 ntTSL 5 BASIC14.92□□□□□ -0.02
COL9A1P20849 FGD4-203ENST00000472289 1629 ntTSL 2 BASIC14.92□□□□□ -0.02
COL9A1P20849 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL9A1P20849 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
COL9A1P20849 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC14.92□□□□□ -0.02
COL9A1P20849 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC14.92□□□□□ -0.02
COL9A1P20849 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
COL9A1P20849 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
COL9A1P20849 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL9A1P20849 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
COL9A1P20849 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC14.92□□□□□ -0.02
COL9A1P20849 MAPK3-204ENST00000395200 997 ntTSL 3 BASIC14.92□□□□□ -0.02
COL9A1P20849 MTND2P15-201ENST00000418575 892 ntBASIC14.92□□□□□ -0.02
COL9A1P20849 BUD23-204ENST00000423497 1219 ntTSL 5 BASIC14.92□□□□□ -0.02
COL9A1P20849 BX248123.1-201ENST00000429070 606 ntTSL 3 BASIC14.92□□□□□ -0.02
COL9A1P20849 AL024474.2-201ENST00000431309 501 ntTSL 3 BASIC14.92□□□□□ -0.02
COL9A1P20849 AL157407.1-201ENST00000435784 904 ntBASIC14.92□□□□□ -0.02
COL9A1P20849 AP002856.3-201ENST00000441665 635 ntTSL 3 BASIC14.92□□□□□ -0.02
COL9A1P20849 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC14.92□□□□□ -0.02
COL9A1P20849 RN7SL672P-201ENST00000474091 317 ntBASIC14.92□□□□□ -0.02
COL9A1P20849 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC14.92□□□□□ -0.02
COL9A1P20849 ALG3P1-201ENST00000508806 1114 ntBASIC14.92□□□□□ -0.02
COL9A1P20849 GCOM2-201ENST00000509133 1104 ntBASIC14.92□□□□□ -0.02
COL9A1P20849 PTPN20-229ENST00000513756 640 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
COL9A1P20849 AC090136.2-201ENST00000517809 420 ntBASIC14.92□□□□□ -0.02
COL9A1P20849 ACER3-205ENST00000526597 1269 ntTSL 2 BASIC14.92□□□□□ -0.02
COL9A1P20849 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC14.92□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms