Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
HOXD4P09016 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXD4P09016 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC13.37□□□□□ -0.27
HOXD4P09016 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXD4P09016 ADAM12-201ENST00000368676 3313 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXD4P09016 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
HOXD4P09016 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXD4P09016 RBM38-204ENST00000371219 760 ntTSL 2 BASIC13.37□□□□□ -0.27
HOXD4P09016 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC13.37□□□□□ -0.27
HOXD4P09016 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
HOXD4P09016 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
HOXD4P09016 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC13.37□□□□□ -0.27
HOXD4P09016 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC13.37□□□□□ -0.27
HOXD4P09016 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC13.37□□□□□ -0.27
HOXD4P09016 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC13.37□□□□□ -0.27
HOXD4P09016 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC13.37□□□□□ -0.27
HOXD4P09016 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC13.37□□□□□ -0.27
HOXD4P09016 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC13.37□□□□□ -0.27
HOXD4P09016 SYT17-208ENST00000568433 812 ntTSL 3 BASIC13.37□□□□□ -0.27
HOXD4P09016 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC13.37□□□□□ -0.27
HOXD4P09016 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC13.37□□□□□ -0.27
HOXD4P09016 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
HOXD4P09016 NRROS-201ENST00000328557 2564 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXD4P09016 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXD4P09016 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXD4P09016 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC13.37□□□□□ -0.27
HOXD4P09016 PES1-204ENST00000402284 2144 ntTSL 5 BASIC13.37□□□□□ -0.27
HOXD4P09016 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC13.37□□□□□ -0.27
HOXD4P09016 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
HOXD4P09016 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXD4P09016 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
HOXD4P09016 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXD4P09016 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXD4P09016 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
HOXD4P09016 ANO9-201ENST00000332826 2542 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXD4P09016 REXO1L4P-201ENST00000605109 1937 ntBASIC13.37□□□□□ -0.27
HOXD4P09016 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
HOXD4P09016 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXD4P09016 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
HOXD4P09016 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXD4P09016 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXD4P09016 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HOXD4P09016 ZNF747-202ENST00000395094 3504 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
HOXD4P09016 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC13.36□□□□□ -0.27
HOXD4P09016 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HOXD4P09016 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HOXD4P09016 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
HOXD4P09016 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC13.36□□□□□ -0.27
HOXD4P09016 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HOXD4P09016 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
HOXD4P09016 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC13.36□□□□□ -0.27
HOXD4P09016 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
HOXD4P09016 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
HOXD4P09016 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HOXD4P09016 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC13.36□□□□□ -0.27
HOXD4P09016 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HOXD4P09016 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HOXD4P09016 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC13.36□□□□□ -0.27
HOXD4P09016 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
HOXD4P09016 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
HOXD4P09016 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC13.36□□□□□ -0.27
HOXD4P09016 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HOXD4P09016 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC13.36□□□□□ -0.27
HOXD4P09016 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
HOXD4P09016 KRTAP19-9P-201ENST00000421795 191 ntBASIC13.36□□□□□ -0.27
HOXD4P09016 AC011742.3-201ENST00000439053 820 ntBASIC13.36□□□□□ -0.27
HOXD4P09016 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
HOXD4P09016 ALG3P1-201ENST00000508806 1114 ntBASIC13.36□□□□□ -0.27
HOXD4P09016 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC13.36□□□□□ -0.27
HOXD4P09016 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
HOXD4P09016 HNRNPA1P36-201ENST00000521313 955 ntBASIC13.36□□□□□ -0.27
HOXD4P09016 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC13.36□□□□□ -0.27
HOXD4P09016 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC13.36□□□□□ -0.27
HOXD4P09016 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC13.36□□□□□ -0.27
HOXD4P09016 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
HOXD4P09016 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC13.36□□□□□ -0.27
HOXD4P09016 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
HOXD4P09016 PABPC1-208ENST00000519004 2401 ntTSL 2 BASIC13.36□□□□□ -0.27
HOXD4P09016 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
HOXD4P09016 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
HOXD4P09016 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HOXD4P09016 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC13.36□□□□□ -0.27
HOXD4P09016 CC2D1B-201ENST00000284376 3377 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
HOXD4P09016 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC13.36□□□□□ -0.27
HOXD4P09016 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
HOXD4P09016 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HOXD4P09016 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
HOXD4P09016 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
HOXD4P09016 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC13.36□□□□□ -0.27
HOXD4P09016 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
HOXD4P09016 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
HOXD4P09016 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC13.36□□□□□ -0.27
HOXD4P09016 OR2I1P-210ENST00000642037 4691 ntBASIC13.36□□□□□ -0.27
HOXD4P09016 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
HOXD4P09016 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
HOXD4P09016 ANO7-202ENST00000402430 2652 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
HOXD4P09016 AC087481.3-201ENST00000602886 1894 ntBASIC13.36□□□□□ -0.27
HOXD4P09016 AL137783.1-201ENST00000623494 1896 ntBASIC13.36□□□□□ -0.27
HOXD4P09016 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
HOXD4P09016 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 88.9 ms