Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
APOEP02649 ACAN-209ENST00000617301 8669 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
APOEP02649 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
APOEP02649 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
APOEP02649 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC15.4■□□□□ 0.06
APOEP02649 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
APOEP02649 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC15.4■□□□□ 0.06
APOEP02649 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC15.4■□□□□ 0.06
APOEP02649 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
APOEP02649 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
APOEP02649 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC15.4■□□□□ 0.06
APOEP02649 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
APOEP02649 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC15.4■□□□□ 0.06
APOEP02649 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC15.4■□□□□ 0.06
APOEP02649 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC15.4■□□□□ 0.06
APOEP02649 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
APOEP02649 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
APOEP02649 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
APOEP02649 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
APOEP02649 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
APOEP02649 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
APOEP02649 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC15.39■□□□□ 0.05
APOEP02649 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
APOEP02649 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
APOEP02649 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
APOEP02649 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
APOEP02649 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC15.39■□□□□ 0.05
APOEP02649 OS9-204ENST00000389146 2091 ntTSL 2 BASIC15.39■□□□□ 0.05
APOEP02649 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC15.39■□□□□ 0.05
APOEP02649 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
APOEP02649 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC15.39■□□□□ 0.05
APOEP02649 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC15.39■□□□□ 0.05
APOEP02649 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC15.39■□□□□ 0.05
APOEP02649 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
APOEP02649 GOLGA2P4-201ENST00000441462 777 ntBASIC15.39■□□□□ 0.05
APOEP02649 PUDPP3-201ENST00000445368 636 ntBASIC15.39■□□□□ 0.05
APOEP02649 PFN1P12-201ENST00000455938 534 ntBASIC15.39■□□□□ 0.05
APOEP02649 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC15.39■□□□□ 0.05
APOEP02649 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
APOEP02649 RPSAP36-202ENST00000494591 1261 ntBASIC15.39■□□□□ 0.05
APOEP02649 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC15.39■□□□□ 0.05
APOEP02649 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC15.39■□□□□ 0.05
APOEP02649 AC008825.2-201ENST00000603374 718 ntBASIC15.39■□□□□ 0.05
APOEP02649 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC15.39■□□□□ 0.05
APOEP02649 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
APOEP02649 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
APOEP02649 SHC1P1-201ENST00000425230 1745 ntBASIC15.39■□□□□ 0.05
APOEP02649 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
APOEP02649 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
APOEP02649 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
APOEP02649 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
APOEP02649 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
APOEP02649 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
APOEP02649 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
APOEP02649 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
APOEP02649 HSPA7-201ENST00000445535 1927 ntBASIC15.39■□□□□ 0.05
APOEP02649 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC15.39■□□□□ 0.05
APOEP02649 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
APOEP02649 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
APOEP02649 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
APOEP02649 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC15.38■□□□□ 0.05
APOEP02649 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
APOEP02649 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
APOEP02649 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
APOEP02649 SRC-202ENST00000373558 4304 ntTSL 5 BASIC15.38■□□□□ 0.05
APOEP02649 AC027601.5-201ENST00000624065 2482 ntBASIC15.38■□□□□ 0.05
APOEP02649 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
APOEP02649 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC15.38■□□□□ 0.05
APOEP02649 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
APOEP02649 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC15.38■□□□□ 0.05
APOEP02649 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC15.38■□□□□ 0.05
APOEP02649 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
APOEP02649 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC15.38■□□□□ 0.05
APOEP02649 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
APOEP02649 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
APOEP02649 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC15.38■□□□□ 0.05
APOEP02649 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
APOEP02649 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
APOEP02649 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
APOEP02649 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC15.38■□□□□ 0.05
APOEP02649 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
APOEP02649 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC15.38■□□□□ 0.05
APOEP02649 ACTBP11-201ENST00000436287 1126 ntBASIC15.38■□□□□ 0.05
APOEP02649 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC15.38■□□□□ 0.05
APOEP02649 AC092658.1-201ENST00000505836 891 ntBASIC15.38■□□□□ 0.05
APOEP02649 AC100850.1-201ENST00000506768 649 ntBASIC15.38■□□□□ 0.05
APOEP02649 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC15.38■□□□□ 0.05
APOEP02649 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC15.38■□□□□ 0.05
APOEP02649 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC15.38■□□□□ 0.05
APOEP02649 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC15.38■□□□□ 0.05
APOEP02649 RNF41-210ENST00000552244 716 ntTSL 3 BASIC15.38■□□□□ 0.05
APOEP02649 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC15.38■□□□□ 0.05
APOEP02649 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC15.38■□□□□ 0.05
APOEP02649 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC15.38■□□□□ 0.05
APOEP02649 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC15.38■□□□□ 0.05
APOEP02649 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
APOEP02649 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
APOEP02649 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
APOEP02649 TKT-201ENST00000296289 1931 ntTSL 5 BASIC15.38■□□□□ 0.05
APOEP02649 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms