Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
NPHP4O75161 RIBC1-202ENST00000375327 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
NPHP4O75161 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC19.93■□□□□ 0.78
NPHP4O75161 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC19.93■□□□□ 0.78
NPHP4O75161 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
NPHP4O75161 DAO-208ENST00000551281 1345 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
NPHP4O75161 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
NPHP4O75161 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
NPHP4O75161 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
NPHP4O75161 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
NPHP4O75161 WARS-232ENST00000556645 2508 ntTSL 5 BASIC19.93■□□□□ 0.78
NPHP4O75161 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
NPHP4O75161 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
NPHP4O75161 GPM6B-202ENST00000355135 1673 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
NPHP4O75161 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
NPHP4O75161 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
NPHP4O75161 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
NPHP4O75161 SHMT2-203ENST00000449049 2121 ntTSL 2 BASIC19.93■□□□□ 0.78
NPHP4O75161 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
NPHP4O75161 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
NPHP4O75161 CALML6-201ENST00000307786 1101 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
NPHP4O75161 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
NPHP4O75161 MIR339-201ENST00000362153 94 ntBASIC19.93■□□□□ 0.78
NPHP4O75161 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
NPHP4O75161 GAPDH-203ENST00000396858 1292 ntTSL 5 BASIC19.93■□□□□ 0.78
NPHP4O75161 GAPDH-204ENST00000396859 1256 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
NPHP4O75161 KRT18P33-201ENST00000398525 1043 ntBASIC19.93■□□□□ 0.78
NPHP4O75161 Z82188.2-201ENST00000419128 630 ntTSL 5 BASIC19.93■□□□□ 0.78
NPHP4O75161 KCNK15-AS1-203ENST00000427598 862 ntTSL 2 BASIC19.93■□□□□ 0.78
NPHP4O75161 MOCS1-207ENST00000432280 1071 ntTSL 5 BASIC19.93■□□□□ 0.78
NPHP4O75161 AC019205.2-201ENST00000442007 1083 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
NPHP4O75161 SLC25A15P1-201ENST00000456738 342 ntBASIC19.93■□□□□ 0.78
NPHP4O75161 AP003043.1-201ENST00000527804 547 ntTSL 4 BASIC19.93■□□□□ 0.78
NPHP4O75161 ABCC6P1-203ENST00000565566 1170 ntBASIC19.93■□□□□ 0.78
NPHP4O75161 AC004584.1-201ENST00000572187 549 ntTSL 3 BASIC19.93■□□□□ 0.78
NPHP4O75161 AC005498.2-204ENST00000590613 413 ntTSL 3 BASIC19.93■□□□□ 0.78
NPHP4O75161 ATF7-212ENST00000591397 860 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
NPHP4O75161 PRR20FP-201ENST00000603320 180 ntBASIC19.93■□□□□ 0.78
NPHP4O75161 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC19.92■□□□□ 0.78
NPHP4O75161 CACNA1A-211ENST00000592864 1623 ntTSL 3 BASIC19.92■□□□□ 0.78
NPHP4O75161 AC011270.2-201ENST00000624293 2550 ntBASIC19.92■□□□□ 0.78
NPHP4O75161 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NPHP4O75161 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NPHP4O75161 ACE3P-201ENST00000423435 1973 ntBASIC19.92■□□□□ 0.78
NPHP4O75161 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
NPHP4O75161 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
NPHP4O75161 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
NPHP4O75161 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
NPHP4O75161 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
NPHP4O75161 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
NPHP4O75161 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
NPHP4O75161 POLR2LP1-206ENST00000444785 187 ntBASIC19.92■□□□□ 0.78
NPHP4O75161 GULOP-201ENST00000454030 748 ntBASIC19.92■□□□□ 0.78
NPHP4O75161 AC007679.1-201ENST00000458609 502 ntBASIC19.92■□□□□ 0.78
NPHP4O75161 FAM187B2P-201ENST00000577135 713 ntBASIC19.92■□□□□ 0.78
NPHP4O75161 BIRC5-211ENST00000592734 386 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
NPHP4O75161 AC009041.4-201ENST00000620075 638 ntBASIC19.92■□□□□ 0.78
NPHP4O75161 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
NPHP4O75161 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NPHP4O75161 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NPHP4O75161 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC19.92■□□□□ 0.78
NPHP4O75161 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
NPHP4O75161 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
NPHP4O75161 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
NPHP4O75161 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
NPHP4O75161 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC19.91■□□□□ 0.78
NPHP4O75161 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
NPHP4O75161 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC19.91■□□□□ 0.78
NPHP4O75161 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
NPHP4O75161 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC19.91■□□□□ 0.78
NPHP4O75161 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
NPHP4O75161 SNCAIP-206ENST00000414317 1591 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
NPHP4O75161 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
NPHP4O75161 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
NPHP4O75161 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC19.91■□□□□ 0.78
NPHP4O75161 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
NPHP4O75161 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
NPHP4O75161 AL137077.2-201ENST00000635124 1608 ntBASIC19.91■□□□□ 0.78
NPHP4O75161 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
NPHP4O75161 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
NPHP4O75161 MT1H-201ENST00000332374 397 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
NPHP4O75161 SPATA21-202ENST00000375577 1136 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
NPHP4O75161 RN7SKP212-201ENST00000410851 328 ntBASIC19.91■□□□□ 0.78
NPHP4O75161 SNHG14-201ENST00000414175 610 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
NPHP4O75161 PHBP10-201ENST00000416467 784 ntBASIC19.91■□□□□ 0.78
NPHP4O75161 CCND3P1-201ENST00000438347 580 ntBASIC19.91■□□□□ 0.78
NPHP4O75161 SGO1-AS1-201ENST00000441442 499 ntTSL 4 BASIC19.91■□□□□ 0.78
NPHP4O75161 PSME2P2-201ENST00000453033 700 ntBASIC19.91■□□□□ 0.78
NPHP4O75161 AC022447.5-201ENST00000504817 392 ntBASIC19.91■□□□□ 0.78
NPHP4O75161 CRYBB2P1-204ENST00000509460 701 ntTSL 3 BASIC19.91■□□□□ 0.78
NPHP4O75161 AC079779.4-201ENST00000619113 548 ntTSL 5 BASIC19.91■□□□□ 0.78
NPHP4O75161 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
NPHP4O75161 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
NPHP4O75161 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC19.91■□□□□ 0.78
NPHP4O75161 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
NPHP4O75161 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC19.91■□□□□ 0.78
NPHP4O75161 AC064801.2-201ENST00000625052 1303 ntBASIC19.91■□□□□ 0.78
NPHP4O75161 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC19.91■□□□□ 0.78
NPHP4O75161 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
NPHP4O75161 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC19.9■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms