Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 AC100827.2-201ENST00000563214 1194 ntBASIC13.8□□□□□ -0.2
LDB3O75112 AC005730.2-201ENST00000564549 1184 ntBASIC13.8□□□□□ -0.2
LDB3O75112 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC13.8□□□□□ -0.2
LDB3O75112 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
LDB3O75112 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC13.8□□□□□ -0.2
LDB3O75112 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC13.8□□□□□ -0.2
LDB3O75112 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC13.8□□□□□ -0.2
LDB3O75112 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC13.8□□□□□ -0.2
LDB3O75112 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
LDB3O75112 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC13.8□□□□□ -0.2
LDB3O75112 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
LDB3O75112 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
LDB3O75112 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
LDB3O75112 AC012617.1-204ENST00000586340 2305 ntBASIC13.8□□□□□ -0.2
LDB3O75112 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
LDB3O75112 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
LDB3O75112 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
LDB3O75112 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
LDB3O75112 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
LDB3O75112 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
LDB3O75112 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
LDB3O75112 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC13.8□□□□□ -0.2
LDB3O75112 AC011498.7-201ENST00000624986 2027 ntBASIC13.8□□□□□ -0.2
LDB3O75112 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
LDB3O75112 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC13.79□□□□□ -0.2
LDB3O75112 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
LDB3O75112 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
LDB3O75112 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
LDB3O75112 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
LDB3O75112 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC13.79□□□□□ -0.2
LDB3O75112 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
LDB3O75112 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
LDB3O75112 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
LDB3O75112 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
LDB3O75112 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
LDB3O75112 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
LDB3O75112 ST20-AS1-201ENST00000560255 4223 ntBASIC13.79□□□□□ -0.2
LDB3O75112 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
LDB3O75112 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
LDB3O75112 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
LDB3O75112 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
LDB3O75112 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC13.79□□□□□ -0.2
LDB3O75112 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
LDB3O75112 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
LDB3O75112 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
LDB3O75112 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
LDB3O75112 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
LDB3O75112 HNRNPA1P27-201ENST00000412087 955 ntBASIC13.79□□□□□ -0.2
LDB3O75112 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC13.79□□□□□ -0.2
LDB3O75112 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC13.79□□□□□ -0.2
LDB3O75112 PTPA-215ENST00000432124 567 ntTSL 4 BASIC13.79□□□□□ -0.2
LDB3O75112 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC13.79□□□□□ -0.2
LDB3O75112 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC13.79□□□□□ -0.2
LDB3O75112 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC13.79□□□□□ -0.2
LDB3O75112 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC13.79□□□□□ -0.2
LDB3O75112 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
LDB3O75112 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
LDB3O75112 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
LDB3O75112 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC13.79□□□□□ -0.2
LDB3O75112 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC13.79□□□□□ -0.2
LDB3O75112 AC091271.1-201ENST00000611877 1162 ntBASIC13.79□□□□□ -0.2
LDB3O75112 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC13.79□□□□□ -0.2
LDB3O75112 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC13.79□□□□□ -0.2
LDB3O75112 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
LDB3O75112 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC13.79□□□□□ -0.2
LDB3O75112 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
LDB3O75112 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC13.79□□□□□ -0.2
LDB3O75112 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
LDB3O75112 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
LDB3O75112 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
LDB3O75112 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
LDB3O75112 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC13.79□□□□□ -0.2
LDB3O75112 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
LDB3O75112 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
LDB3O75112 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
LDB3O75112 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
LDB3O75112 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
LDB3O75112 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC13.78□□□□□ -0.2
LDB3O75112 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC13.78□□□□□ -0.2
LDB3O75112 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
LDB3O75112 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
LDB3O75112 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC13.78□□□□□ -0.2
LDB3O75112 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
LDB3O75112 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC13.78□□□□□ -0.2
LDB3O75112 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
LDB3O75112 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
LDB3O75112 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
LDB3O75112 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
LDB3O75112 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
LDB3O75112 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC13.78□□□□□ -0.2
LDB3O75112 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
LDB3O75112 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
LDB3O75112 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
LDB3O75112 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
LDB3O75112 MIR1908-201ENST00000410394 80 ntBASIC13.78□□□□□ -0.2
LDB3O75112 AC007274.1-201ENST00000439805 662 ntBASIC13.78□□□□□ -0.2
LDB3O75112 KLF2P1-201ENST00000447438 1042 ntBASIC13.78□□□□□ -0.2
LDB3O75112 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC13.78□□□□□ -0.2
LDB3O75112 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
LDB3O75112 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC13.78□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 84.9 ms