Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC18.47■□□□□ 0.55
NPHP1O15259 AC007326.1-201ENST00000604539 458 ntBASIC18.47■□□□□ 0.55
NPHP1O15259 AC005632.3-201ENST00000605544 308 ntBASIC18.47■□□□□ 0.55
NPHP1O15259 FXYD6-FXYD2-202ENST00000614497 634 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
NPHP1O15259 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC18.47■□□□□ 0.55
NPHP1O15259 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
NPHP1O15259 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC18.47■□□□□ 0.55
NPHP1O15259 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
NPHP1O15259 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC18.47■□□□□ 0.55
NPHP1O15259 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC18.47■□□□□ 0.55
NPHP1O15259 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC18.47■□□□□ 0.55
NPHP1O15259 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
NPHP1O15259 CFAP46-202ENST00000368586 8278 ntAPPRIS P2 TSL 5 BASIC18.46■□□□□ 0.55
NPHP1O15259 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
NPHP1O15259 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC18.46■□□□□ 0.55
NPHP1O15259 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
NPHP1O15259 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
NPHP1O15259 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
NPHP1O15259 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC18.46■□□□□ 0.55
NPHP1O15259 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC18.46■□□□□ 0.55
NPHP1O15259 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC18.46■□□□□ 0.55
NPHP1O15259 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
NPHP1O15259 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
NPHP1O15259 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC18.46■□□□□ 0.55
NPHP1O15259 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
NPHP1O15259 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
NPHP1O15259 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
NPHP1O15259 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC18.46■□□□□ 0.55
NPHP1O15259 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC18.46■□□□□ 0.55
NPHP1O15259 EIF1AD-211ENST00000533544 965 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.55
NPHP1O15259 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
NPHP1O15259 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.55
NPHP1O15259 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC18.46■□□□□ 0.55
NPHP1O15259 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC18.46■□□□□ 0.55
NPHP1O15259 BX088702.1-201ENST00000610784 235 ntBASIC18.46■□□□□ 0.55
NPHP1O15259 MIR6842-201ENST00000612539 65 ntBASIC18.46■□□□□ 0.55
NPHP1O15259 YRDCP1-201ENST00000621419 643 ntBASIC18.46■□□□□ 0.55
NPHP1O15259 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
NPHP1O15259 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
NPHP1O15259 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC18.46■□□□□ 0.55
NPHP1O15259 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
NPHP1O15259 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
NPHP1O15259 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
NPHP1O15259 FES-204ENST00000414248 2327 ntTSL 2 BASIC18.46■□□□□ 0.55
NPHP1O15259 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
NPHP1O15259 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
NPHP1O15259 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
NPHP1O15259 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
NPHP1O15259 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC18.46■□□□□ 0.55
NPHP1O15259 CYP4F23P-201ENST00000593402 1579 ntBASIC18.46■□□□□ 0.55
NPHP1O15259 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
NPHP1O15259 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC18.45■□□□□ 0.54
NPHP1O15259 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
NPHP1O15259 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
NPHP1O15259 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC18.45■□□□□ 0.54
NPHP1O15259 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
NPHP1O15259 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
NPHP1O15259 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
NPHP1O15259 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
NPHP1O15259 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
NPHP1O15259 BID-213ENST00000615414 2236 ntTSL 5 BASIC18.45■□□□□ 0.54
NPHP1O15259 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
NPHP1O15259 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
NPHP1O15259 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
NPHP1O15259 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
NPHP1O15259 NUP133-201ENST00000261396 5207 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
NPHP1O15259 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC18.45■□□□□ 0.54
NPHP1O15259 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC18.45■□□□□ 0.54
NPHP1O15259 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC18.45■□□□□ 0.54
NPHP1O15259 NAGK-204ENST00000443872 878 ntTSL 3 BASIC18.45■□□□□ 0.54
NPHP1O15259 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC18.45■□□□□ 0.54
NPHP1O15259 GCOM2-201ENST00000509133 1104 ntBASIC18.45■□□□□ 0.54
NPHP1O15259 OSMR-AS1-202ENST00000512519 837 ntTSL 2 BASIC18.45■□□□□ 0.54
NPHP1O15259 AP003398.1-201ENST00000531124 318 ntBASIC18.45■□□□□ 0.54
NPHP1O15259 C12orf10-207ENST00000549488 840 ntTSL 5 BASIC18.45■□□□□ 0.54
NPHP1O15259 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC18.45■□□□□ 0.54
NPHP1O15259 MEG3_2.1-201ENST00000611456 105 ntBASIC18.45■□□□□ 0.54
NPHP1O15259 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
NPHP1O15259 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC18.45■□□□□ 0.54
NPHP1O15259 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
NPHP1O15259 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
NPHP1O15259 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
NPHP1O15259 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
NPHP1O15259 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
NPHP1O15259 ZBTB11-201ENST00000312938 6020 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
NPHP1O15259 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
NPHP1O15259 AC018629.1-201ENST00000623381 1736 ntBASIC18.45■□□□□ 0.54
NPHP1O15259 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
NPHP1O15259 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
NPHP1O15259 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
NPHP1O15259 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
NPHP1O15259 LINC01165-201ENST00000445190 1623 ntBASIC18.45■□□□□ 0.54
NPHP1O15259 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC18.45■□□□□ 0.54
NPHP1O15259 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
NPHP1O15259 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
NPHP1O15259 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC18.45■□□□□ 0.54
NPHP1O15259 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC18.45■□□□□ 0.54
NPHP1O15259 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
NPHP1O15259 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC18.44■□□□□ 0.54
NPHP1O15259 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms