Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC14.32□□□□□ -0.12
VPS4AQ9UN37 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
VPS4AQ9UN37 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VPS4AQ9UN37 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
VPS4AQ9UN37 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
VPS4AQ9UN37 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
VPS4AQ9UN37 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC14.32□□□□□ -0.12
VPS4AQ9UN37 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC14.32□□□□□ -0.12
VPS4AQ9UN37 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VPS4AQ9UN37 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VPS4AQ9UN37 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
VPS4AQ9UN37 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
VPS4AQ9UN37 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
VPS4AQ9UN37 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VPS4AQ9UN37 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC14.32□□□□□ -0.12
VPS4AQ9UN37 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VPS4AQ9UN37 AC244021.1-201ENST00000417218 3662 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
VPS4AQ9UN37 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
VPS4AQ9UN37 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
VPS4AQ9UN37 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC14.31□□□□□ -0.12
VPS4AQ9UN37 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
VPS4AQ9UN37 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
VPS4AQ9UN37 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
VPS4AQ9UN37 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
VPS4AQ9UN37 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
VPS4AQ9UN37 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
VPS4AQ9UN37 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC14.31□□□□□ -0.12
VPS4AQ9UN37 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC14.31□□□□□ -0.12
VPS4AQ9UN37 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
VPS4AQ9UN37 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
VPS4AQ9UN37 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
VPS4AQ9UN37 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC14.31□□□□□ -0.12
VPS4AQ9UN37 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
VPS4AQ9UN37 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC14.31□□□□□ -0.12
VPS4AQ9UN37 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC14.31□□□□□ -0.12
VPS4AQ9UN37 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
VPS4AQ9UN37 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
VPS4AQ9UN37 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
VPS4AQ9UN37 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
VPS4AQ9UN37 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
VPS4AQ9UN37 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
VPS4AQ9UN37 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
VPS4AQ9UN37 MPV17-206ENST00000402722 827 ntTSL 3 BASIC14.31□□□□□ -0.12
VPS4AQ9UN37 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC14.31□□□□□ -0.12
VPS4AQ9UN37 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC14.31□□□□□ -0.12
VPS4AQ9UN37 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
VPS4AQ9UN37 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
VPS4AQ9UN37 DUX4L45-201ENST00000566406 1057 ntBASIC14.31□□□□□ -0.12
VPS4AQ9UN37 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC14.31□□□□□ -0.12
VPS4AQ9UN37 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC14.31□□□□□ -0.12
VPS4AQ9UN37 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC14.31□□□□□ -0.12
VPS4AQ9UN37 AC107373.2-201ENST00000607735 490 ntBASIC14.31□□□□□ -0.12
VPS4AQ9UN37 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
VPS4AQ9UN37 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
VPS4AQ9UN37 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
VPS4AQ9UN37 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
VPS4AQ9UN37 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
VPS4AQ9UN37 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC14.31□□□□□ -0.12
VPS4AQ9UN37 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
VPS4AQ9UN37 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
VPS4AQ9UN37 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
VPS4AQ9UN37 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC14.31□□□□□ -0.12
VPS4AQ9UN37 AL137783.1-201ENST00000623494 1896 ntBASIC14.31□□□□□ -0.12
VPS4AQ9UN37 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
VPS4AQ9UN37 DRD5P1-201ENST00000456605 1438 ntBASIC14.31□□□□□ -0.12
VPS4AQ9UN37 AC015802.1-201ENST00000588104 1449 ntBASIC14.31□□□□□ -0.12
VPS4AQ9UN37 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC14.31□□□□□ -0.12
VPS4AQ9UN37 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
VPS4AQ9UN37 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC14.31□□□□□ -0.12
VPS4AQ9UN37 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
VPS4AQ9UN37 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
VPS4AQ9UN37 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
VPS4AQ9UN37 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
VPS4AQ9UN37 AMT-232ENST00000636199 1546 ntTSL 5 BASIC14.31□□□□□ -0.12
VPS4AQ9UN37 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
VPS4AQ9UN37 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
VPS4AQ9UN37 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC14.3□□□□□ -0.12
VPS4AQ9UN37 AL138799.1-201ENST00000448213 1675 ntBASIC14.3□□□□□ -0.12
VPS4AQ9UN37 NFATC1-205ENST00000427363 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
VPS4AQ9UN37 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
VPS4AQ9UN37 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
VPS4AQ9UN37 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
VPS4AQ9UN37 AC126335.2-201ENST00000623362 4637 ntBASIC14.3□□□□□ -0.12
VPS4AQ9UN37 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
VPS4AQ9UN37 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
VPS4AQ9UN37 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
VPS4AQ9UN37 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
VPS4AQ9UN37 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
VPS4AQ9UN37 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
VPS4AQ9UN37 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
VPS4AQ9UN37 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
VPS4AQ9UN37 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
VPS4AQ9UN37 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC14.3□□□□□ -0.12
VPS4AQ9UN37 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC14.3□□□□□ -0.12
VPS4AQ9UN37 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
VPS4AQ9UN37 C1QBPP1-201ENST00000400117 770 ntBASIC14.3□□□□□ -0.12
VPS4AQ9UN37 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
VPS4AQ9UN37 HLA-K-203ENST00000430151 1046 ntBASIC14.3□□□□□ -0.12
VPS4AQ9UN37 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC14.3□□□□□ -0.12
VPS4AQ9UN37 TPT1P11-201ENST00000458482 498 ntBASIC14.3□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms