Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
CLCF1Q9UBD9 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
CLCF1Q9UBD9 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC13.02□□□□□ -0.32
CLCF1Q9UBD9 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
CLCF1Q9UBD9 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
CLCF1Q9UBD9 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC13.02□□□□□ -0.32
CLCF1Q9UBD9 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC13.02□□□□□ -0.32
CLCF1Q9UBD9 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
CLCF1Q9UBD9 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.32
CLCF1Q9UBD9 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
CLCF1Q9UBD9 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC13.02□□□□□ -0.32
CLCF1Q9UBD9 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CLCF1Q9UBD9 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC13.02□□□□□ -0.33
CLCF1Q9UBD9 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CLCF1Q9UBD9 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC13.02□□□□□ -0.33
CLCF1Q9UBD9 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
CLCF1Q9UBD9 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC13.02□□□□□ -0.33
CLCF1Q9UBD9 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
CLCF1Q9UBD9 CMC1-204ENST00000423894 549 ntTSL 2 BASIC13.02□□□□□ -0.33
CLCF1Q9UBD9 AC006335.1-201ENST00000445200 547 ntBASIC13.02□□□□□ -0.33
CLCF1Q9UBD9 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CLCF1Q9UBD9 UPF3AP2-201ENST00000457924 1132 ntBASIC13.02□□□□□ -0.33
CLCF1Q9UBD9 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC13.02□□□□□ -0.33
CLCF1Q9UBD9 NUP210P1-202ENST00000504322 710 ntBASIC13.02□□□□□ -0.33
CLCF1Q9UBD9 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC13.02□□□□□ -0.33
CLCF1Q9UBD9 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC13.02□□□□□ -0.33
CLCF1Q9UBD9 AC105129.2-201ENST00000559536 390 ntBASIC13.02□□□□□ -0.33
CLCF1Q9UBD9 ARL16-210ENST00000574938 751 ntTSL 2 BASIC13.02□□□□□ -0.33
CLCF1Q9UBD9 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC13.02□□□□□ -0.33
CLCF1Q9UBD9 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
CLCF1Q9UBD9 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.33
CLCF1Q9UBD9 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.33
CLCF1Q9UBD9 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
CLCF1Q9UBD9 DDX5-235ENST00000630471 473 ntTSL 4 BASIC13.02□□□□□ -0.33
CLCF1Q9UBD9 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC13.02□□□□□ -0.33
CLCF1Q9UBD9 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CLCF1Q9UBD9 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CLCF1Q9UBD9 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.33
CLCF1Q9UBD9 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
CLCF1Q9UBD9 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CLCF1Q9UBD9 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC13.02□□□□□ -0.33
CLCF1Q9UBD9 KRT8P21-201ENST00000430398 1491 ntBASIC13.02□□□□□ -0.33
CLCF1Q9UBD9 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
CLCF1Q9UBD9 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC13.02□□□□□ -0.33
CLCF1Q9UBD9 AC015688.4-201ENST00000580780 1647 ntBASIC13.02□□□□□ -0.33
CLCF1Q9UBD9 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CLCF1Q9UBD9 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
CLCF1Q9UBD9 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CLCF1Q9UBD9 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CLCF1Q9UBD9 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC13.02□□□□□ -0.33
CLCF1Q9UBD9 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CLCF1Q9UBD9 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC13.02□□□□□ -0.33
CLCF1Q9UBD9 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
CLCF1Q9UBD9 AC018629.1-201ENST00000623381 1736 ntBASIC13.02□□□□□ -0.33
CLCF1Q9UBD9 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CLCF1Q9UBD9 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.33
CLCF1Q9UBD9 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
CLCF1Q9UBD9 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CLCF1Q9UBD9 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC13.01□□□□□ -0.33
CLCF1Q9UBD9 MX1-218ENST00000619682 1980 ntTSL 5 BASIC13.01□□□□□ -0.33
CLCF1Q9UBD9 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CLCF1Q9UBD9 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CLCF1Q9UBD9 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CLCF1Q9UBD9 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC13.01□□□□□ -0.33
CLCF1Q9UBD9 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
CLCF1Q9UBD9 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CLCF1Q9UBD9 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
CLCF1Q9UBD9 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC13.01□□□□□ -0.33
CLCF1Q9UBD9 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CLCF1Q9UBD9 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
CLCF1Q9UBD9 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
CLCF1Q9UBD9 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CLCF1Q9UBD9 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC13.01□□□□□ -0.33
CLCF1Q9UBD9 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC13.01□□□□□ -0.33
CLCF1Q9UBD9 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC13.01□□□□□ -0.33
CLCF1Q9UBD9 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC13.01□□□□□ -0.33
CLCF1Q9UBD9 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC13.01□□□□□ -0.33
CLCF1Q9UBD9 AC012618.1-201ENST00000461223 412 ntBASIC13.01□□□□□ -0.33
CLCF1Q9UBD9 RN7SL720P-201ENST00000488178 304 ntBASIC13.01□□□□□ -0.33
CLCF1Q9UBD9 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC13.01□□□□□ -0.33
CLCF1Q9UBD9 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC13.01□□□□□ -0.33
CLCF1Q9UBD9 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC13.01□□□□□ -0.33
CLCF1Q9UBD9 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC13.01□□□□□ -0.33
CLCF1Q9UBD9 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC13.01□□□□□ -0.33
CLCF1Q9UBD9 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
CLCF1Q9UBD9 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
CLCF1Q9UBD9 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
CLCF1Q9UBD9 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CLCF1Q9UBD9 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC13.01□□□□□ -0.33
CLCF1Q9UBD9 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC13.01□□□□□ -0.33
CLCF1Q9UBD9 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CLCF1Q9UBD9 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC13.01□□□□□ -0.33
CLCF1Q9UBD9 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
CLCF1Q9UBD9 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC13.01□□□□□ -0.33
CLCF1Q9UBD9 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CLCF1Q9UBD9 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CLCF1Q9UBD9 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CLCF1Q9UBD9 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC13.01□□□□□ -0.33
CLCF1Q9UBD9 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
CLCF1Q9UBD9 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 58.5 ms